Experiment: oleate 200uM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0600c and Rv0601c are separated by 113 nucleotides Rv0601c and Rv0602c are separated by 43 nucleotides Rv0602c and Rv0603 are separated by 56 nucleotides Rv0603 and Rv0604 are separated by 71 nucleotides
Rv0600c: Rv0600c - Two component sensor kinase [second part], at 697,904 to 698,410
Rv0600c
Rv0601c: Rv0601c - Two component sensor kinase [first part], at 698,524 to 698,994
Rv0601c
Rv0602c: Rv0602c - Two component DNA binding transcriptional regulatory protein TcrA, at 699,038 to 699,799
Rv0602c
Rv0603: Rv0603 - Possible exported protein, at 699,856 to 700,167
Rv0603
Rv0604: Rv0604 - Probable conserved lipoprotein LpqO, at 700,239 to 701,189
Rv0604
Position (kb) 699
700 Strain fitness (log2 ratio) -1
0
1 at 698.596 kb on + strand, within Rv0601c at 699.147 kb on + strand, within Rv0602c at 699.156 kb on + strand, within Rv0602c at 699.187 kb on - strand, within Rv0602c at 699.549 kb on - strand, within Rv0602c at 699.549 kb on - strand, within Rv0602c at 700.165 kb on + strand at 700.227 kb on - strand at 700.227 kb on - strand at 700.443 kb on + strand, within Rv0604
Per-strain Table
Position Strand Gene LocusTag Fraction oleate 200uM (C) remove 698,596 + Rv0601c 0.15 +0.1 699,147 + Rv0602c 0.14 -0.4 699,156 + Rv0602c 0.15 +0.5 699,187 - Rv0602c 0.20 -0.1 699,549 - Rv0602c 0.67 +1.3 699,549 - Rv0602c 0.67 +0.3 700,165 + -0.2 700,227 - -1.6 700,227 - -0.6 700,443 + Rv0604 0.21 +0.2
Or see this region's nucleotide sequence