Experiment: oleate 200uM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0782 and Rv0783c are separated by 427 nucleotides Rv0783c and Rv0784 are separated by 197 nucleotides Rv0784 and Rv0785 are separated by 15 nucleotides
Rv0782: Rv0782 - Probable protease II PtrBb [second part] (oligopeptidase B), at 874,732 to 876,390
Rv0782
Rv0783c: Rv0783c - Possible multidrug resistance integral membrane efflux protein EmrB, at 876,818 to 878,440
Rv0783c
Rv0784: Rv0784 - Conserved hypothetical protein, at 878,638 to 879,324
Rv0784
Rv0785: Rv0785 - Conserved protein, at 879,340 to 881,040
Rv0785
Position (kb) 876
877
878
879 Strain fitness (log2 ratio) -2
-1
0
1
2 at 875.860 kb on - strand, within Rv0782 at 876.085 kb on + strand, within Rv0782 at 876.320 kb on + strand at 876.325 kb on - strand at 876.419 kb on - strand at 876.462 kb on + strand at 877.269 kb on - strand, within Rv0783c at 877.426 kb on + strand, within Rv0783c at 877.691 kb on - strand, within Rv0783c at 878.034 kb on - strand, within Rv0783c at 878.560 kb on + strand at 878.836 kb on + strand, within Rv0784 at 879.432 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction oleate 200uM (C) remove 875,860 - Rv0782 0.68 -1.9 876,085 + Rv0782 0.82 -1.6 876,320 + -0.1 876,325 - +0.2 876,419 - +0.3 876,462 + -0.6 877,269 - Rv0783c 0.28 +0.6 877,426 + Rv0783c 0.37 -0.0 877,691 - Rv0783c 0.54 -0.9 878,034 - Rv0783c 0.75 +2.7 878,560 + +0.1 878,836 + Rv0784 0.29 -0.4 879,432 - -0.3
Or see this region's nucleotide sequence