Experiment: oleate 200uM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0198c and Rv0199 are separated by 42 nucleotides Rv0199 and Rv0200 overlap by 4 nucleotides Rv0200 and Rv0201c overlap by 4 nucleotides
Rv0198c: Rv0198c - Probable zinc metalloprotease Zmp1, at 234,516 to 236,507
Rv0198c
Rv0199: Rv0199 - Probable conserved membrane protein, at 236,550 to 237,209
Rv0199
Rv0200: Rv0200 - Possible conserved transmembrane protein, at 237,206 to 237,895
Rv0200
Rv0201c: Rv0201c - Conserved protein, at 237,892 to 238,395
Rv0201c
Position (kb) 236
237
238 Strain fitness (log2 ratio) -2
-1
0
1
2 at 235.989 kb on + strand, within Rv0198c at 236.021 kb on - strand, within Rv0198c at 236.068 kb on + strand, within Rv0198c at 236.069 kb on - strand, within Rv0198c at 236.101 kb on + strand, within Rv0198c at 236.101 kb on + strand, within Rv0198c at 236.101 kb on + strand, within Rv0198c at 236.394 kb on + strand at 236.394 kb on + strand at 236.674 kb on - strand, within Rv0199 at 236.693 kb on - strand, within Rv0199 at 236.772 kb on - strand, within Rv0199 at 236.775 kb on + strand, within Rv0199 at 236.775 kb on + strand, within Rv0199 at 236.988 kb on - strand, within Rv0199 at 237.659 kb on + strand, within Rv0200 at 237.659 kb on + strand, within Rv0200 at 237.659 kb on + strand, within Rv0200 at 238.123 kb on - strand, within Rv0201c
Per-strain Table
Position Strand Gene LocusTag Fraction oleate 200uM (C) remove 235,989 + Rv0198c 0.74 -0.7 236,021 - Rv0198c 0.76 -1.3 236,068 + Rv0198c 0.78 +1.9 236,069 - Rv0198c 0.78 -1.1 236,101 + Rv0198c 0.80 +0.9 236,101 + Rv0198c 0.80 +1.4 236,101 + Rv0198c 0.80 -0.6 236,394 + -0.2 236,394 + -0.1 236,674 - Rv0199 0.19 +2.4 236,693 - Rv0199 0.22 -0.6 236,772 - Rv0199 0.34 -0.3 236,775 + Rv0199 0.34 +0.9 236,775 + Rv0199 0.34 -2.6 236,988 - Rv0199 0.66 -0.4 237,659 + Rv0200 0.66 +1.0 237,659 + Rv0200 0.66 +2.5 237,659 + Rv0200 0.66 +1.7 238,123 - Rv0201c 0.46 -1.1
Or see this region's nucleotide sequence