Experiment: Urea 10mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv3562 and Rv3563 overlap by 4 nucleotides Rv3563 and Rv3564 overlap by 4 nucleotides Rv3564 and Rv3565 overlap by 4 nucleotides
Rv3562: Rv3562 - Probable acyl-CoA dehydrogenase FadE31, at 4,003,161 to 4,004,294
Rv3562
Rv3563: Rv3563 - Probable acyl-CoA dehydrogenase FadE32, at 4,004,291 to 4,005,250
Rv3563
Rv3564: Rv3564 - Probable acyl-CoA dehydrogenase FadE33, at 4,005,247 to 4,006,203
Rv3564
Rv3565: Rv3565 - Possible aspartate aminotransferase AspB (transaminase A) (ASPAT) (glutamic--oxaloacetic transaminase) (glutamic--aspartic transaminase), at 4,006,200 to 4,007,366
Rv3565
Position (kb) 4005
4006
4007 Strain fitness (log2 ratio) -2
-1
0
1 at 4004.787 kb on - strand, within Rv3563 at 4004.846 kb on + strand, within Rv3563 at 4004.847 kb on - strand, within Rv3563 at 4005.380 kb on + strand, within Rv3564 at 4005.381 kb on - strand, within Rv3564 at 4005.619 kb on + strand, within Rv3564 at 4005.937 kb on + strand, within Rv3564 at 4007.160 kb on + strand, within Rv3565 at 4007.160 kb on + strand, within Rv3565
Per-strain Table
Position Strand Gene LocusTag Fraction Urea 10mM (N) remove 4,004,787 - Rv3563 0.52 +0.7 4,004,846 + Rv3563 0.58 -1.9 4,004,847 - Rv3563 0.58 +1.4 4,005,380 + Rv3564 0.14 -0.8 4,005,381 - Rv3564 0.14 -2.6 4,005,619 + Rv3564 0.39 -0.5 4,005,937 + Rv3564 0.72 -2.1 4,007,160 + Rv3565 0.82 -0.5 4,007,160 + Rv3565 0.82 +0.0
Or see this region's nucleotide sequence