Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1384

Experiment: Urea 10mM (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv1383 and Rv1384 overlap by 1 nucleotidesRv1384 and Rv1385 overlap by 4 nucleotides Rv1383: Rv1383 - Probable carbamoyl-phosphate synthase small chain CarA (carbamoyl-phosphate synthetase glutamine chain), at 1,555,971 to 1,557,101 Rv1383 Rv1384: Rv1384 - Probable carbamoyl-phosphate synthase large chain CarB (carbamoyl-phosphate synthetase ammonia chain), at 1,557,101 to 1,560,448 Rv1384 Rv1385: Rv1385 - Probable orotidine 5'-phosphate decarboxylase PyrF (OMP decarboxylase) (ompdecase), at 1,560,445 to 1,561,269 Rv1385 Position (kb) 1557 1558 1559 1560 1561Strain fitness (log2 ratio) -1 0 1at 1561.373 kb on - strandat 1561.414 kb on - strandat 1561.414 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea 10mM (N)
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1,561,373 - -0.3
1,561,414 - -1.2
1,561,414 - +0.1

Or see this region's nucleotide sequence