Experiment: Urea 10mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0173 and Rv0174 overlap by 7 nucleotides Rv0174 and Rv0175 are separated by 35 nucleotides Rv0175 and Rv0176 overlap by 4 nucleotides
Rv0173: Rv0173 - Possible Mce-family lipoprotein LprK (Mce-family lipoprotein Mce1E), at 204,065 to 205,237
Rv0173
Rv0174: Rv0174 - Mce-family protein Mce1F, at 205,231 to 206,778
Rv0174
Rv0175: Rv0175 - Probable conserved Mce associated membrane protein, at 206,814 to 207,455
Rv0175
Rv0176: Rv0176 - Probable conserved Mce associated transmembrane protein, at 207,452 to 208,420
Rv0176
Position (kb) 205
206
207 Strain fitness (log2 ratio) -2
-1
0
1
2 at 204.691 kb on + strand, within Rv0173 at 204.728 kb on + strand, within Rv0173 at 204.728 kb on + strand, within Rv0173 at 204.728 kb on + strand, within Rv0173 at 204.728 kb on + strand, within Rv0173 at 204.774 kb on + strand, within Rv0173 at 204.838 kb on - strand, within Rv0173 at 204.950 kb on + strand, within Rv0173 at 204.950 kb on + strand, within Rv0173 at 204.951 kb on - strand, within Rv0173 at 205.028 kb on + strand, within Rv0173 at 205.029 kb on - strand, within Rv0173 at 205.029 kb on - strand, within Rv0173 at 205.062 kb on - strand, within Rv0173 at 205.062 kb on - strand, within Rv0173 at 205.212 kb on + strand at 205.213 kb on - strand at 205.309 kb on + strand at 205.313 kb on - strand at 205.313 kb on - strand at 205.388 kb on - strand, within Rv0174 at 205.416 kb on + strand, within Rv0174 at 205.588 kb on + strand, within Rv0174 at 205.588 kb on + strand, within Rv0174 at 205.589 kb on - strand, within Rv0174 at 205.589 kb on - strand, within Rv0174 at 206.063 kb on - strand, within Rv0174 at 206.180 kb on - strand, within Rv0174 at 206.269 kb on + strand, within Rv0174 at 206.269 kb on + strand, within Rv0174 at 206.270 kb on - strand, within Rv0174 at 206.377 kb on - strand, within Rv0174 at 206.387 kb on - strand, within Rv0174 at 206.387 kb on - strand, within Rv0174 at 206.623 kb on - strand, within Rv0174 at 206.623 kb on - strand, within Rv0174 at 206.636 kb on - strand at 206.711 kb on - strand at 206.711 kb on - strand at 206.795 kb on + strand at 206.808 kb on - strand at 207.420 kb on + strand at 207.422 kb on + strand at 207.423 kb on - strand at 207.423 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Urea 10mM (N) remove 204,691 + Rv0173 0.53 -0.4 204,728 + Rv0173 0.57 -0.8 204,728 + Rv0173 0.57 -2.4 204,728 + Rv0173 0.57 -0.5 204,728 + Rv0173 0.57 +0.3 204,774 + Rv0173 0.60 -2.6 204,838 - Rv0173 0.66 -1.3 204,950 + Rv0173 0.75 -0.3 204,950 + Rv0173 0.75 +0.9 204,951 - Rv0173 0.76 +0.9 205,028 + Rv0173 0.82 -1.1 205,029 - Rv0173 0.82 -0.2 205,029 - Rv0173 0.82 -0.4 205,062 - Rv0173 0.85 -0.4 205,062 - Rv0173 0.85 -1.5 205,212 + -0.1 205,213 - +1.9 205,309 + +1.0 205,313 - +0.3 205,313 - -0.4 205,388 - Rv0174 0.10 -1.3 205,416 + Rv0174 0.12 -0.5 205,588 + Rv0174 0.23 -0.6 205,588 + Rv0174 0.23 -0.7 205,589 - Rv0174 0.23 -0.9 205,589 - Rv0174 0.23 -0.9 206,063 - Rv0174 0.54 +0.9 206,180 - Rv0174 0.61 +0.3 206,269 + Rv0174 0.67 +0.5 206,269 + Rv0174 0.67 -1.1 206,270 - Rv0174 0.67 -0.9 206,377 - Rv0174 0.74 -1.1 206,387 - Rv0174 0.75 -0.7 206,387 - Rv0174 0.75 -1.2 206,623 - Rv0174 0.90 -1.0 206,623 - Rv0174 0.90 -1.1 206,636 - +2.7 206,711 - +0.2 206,711 - -0.6 206,795 + -1.1 206,808 - -0.2 207,420 + +0.4 207,422 + +0.1 207,423 - -0.6 207,423 - +0.3
Or see this region's nucleotide sequence