Experiment: Urea 10mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0071 and Rv0072 are separated by 430 nucleotides Rv0072 and Rv0073 are separated by 2 nucleotides
Rv0071: Rv0071 - Possible maturase, at 79,486 to 80,193
Rv0071
Rv0072: Rv0072 - Probable glutamine-transport transmembrane protein ABC transporter, at 80,624 to 81,673
Rv0072
Rv0073: Rv0073 - Probable glutamine-transport ATP-binding protein ABC transporter, at 81,676 to 82,668
Rv0073
Position (kb) 80
81
82 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 79.788 kb on - strand, within Rv0071 at 79.894 kb on + strand, within Rv0071 at 79.894 kb on + strand, within Rv0071 at 79.895 kb on - strand, within Rv0071 at 79.917 kb on + strand, within Rv0071 at 80.521 kb on + strand at 80.522 kb on - strand at 80.522 kb on - strand at 80.522 kb on - strand at 80.552 kb on - strand at 80.612 kb on + strand at 80.613 kb on - strand at 81.166 kb on - strand, within Rv0072 at 81.179 kb on + strand, within Rv0072 at 81.180 kb on - strand, within Rv0072 at 81.216 kb on + strand, within Rv0072 at 81.216 kb on + strand, within Rv0072 at 81.216 kb on + strand, within Rv0072 at 81.216 kb on + strand, within Rv0072 at 81.216 kb on + strand, within Rv0072 at 81.216 kb on + strand, within Rv0072 at 81.216 kb on + strand, within Rv0072 at 81.216 kb on + strand, within Rv0072 at 81.217 kb on - strand, within Rv0072 at 81.217 kb on - strand, within Rv0072 at 81.217 kb on - strand, within Rv0072 at 81.217 kb on - strand, within Rv0072 at 81.220 kb on + strand, within Rv0072 at 81.221 kb on - strand, within Rv0072 at 81.221 kb on - strand, within Rv0072 at 81.374 kb on + strand, within Rv0072 at 81.374 kb on + strand, within Rv0072 at 81.374 kb on + strand, within Rv0072 at 81.396 kb on + strand, within Rv0072 at 81.396 kb on + strand, within Rv0072 at 81.396 kb on + strand, within Rv0072 at 81.396 kb on + strand, within Rv0072 at 81.445 kb on + strand, within Rv0072 at 81.462 kb on + strand, within Rv0072 at 81.567 kb on - strand, within Rv0072 at 81.567 kb on - strand, within Rv0072 at 81.567 kb on - strand, within Rv0072 at 81.715 kb on + strand at 81.716 kb on - strand at 81.716 kb on - strand at 81.716 kb on - strand at 81.716 kb on - strand at 81.727 kb on + strand at 81.735 kb on + strand at 81.896 kb on + strand, within Rv0073 at 81.896 kb on + strand, within Rv0073 at 81.897 kb on - strand, within Rv0073 at 81.897 kb on - strand, within Rv0073 at 81.927 kb on + strand, within Rv0073 at 81.927 kb on + strand, within Rv0073 at 81.928 kb on - strand, within Rv0073 at 81.928 kb on - strand, within Rv0073 at 82.004 kb on + strand, within Rv0073 at 82.005 kb on - strand, within Rv0073 at 82.362 kb on - strand, within Rv0073 at 82.417 kb on + strand, within Rv0073 at 82.505 kb on - strand, within Rv0073 at 82.585 kb on + strand at 82.586 kb on - strand at 82.587 kb on + strand at 82.588 kb on - strand at 82.588 kb on - strand at 82.666 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Urea 10mM (N) remove 79,788 - Rv0071 0.43 -0.7 79,894 + Rv0071 0.58 -0.5 79,894 + Rv0071 0.58 +1.9 79,895 - Rv0071 0.58 +0.6 79,917 + Rv0071 0.61 -0.1 80,521 + +1.3 80,522 - -1.5 80,522 - -0.7 80,522 - -0.7 80,552 - +0.1 80,612 + -1.2 80,613 - -1.2 81,166 - Rv0072 0.52 +0.2 81,179 + Rv0072 0.53 -0.3 81,180 - Rv0072 0.53 -0.4 81,216 + Rv0072 0.56 -0.4 81,216 + Rv0072 0.56 -0.2 81,216 + Rv0072 0.56 -0.7 81,216 + Rv0072 0.56 +0.3 81,216 + Rv0072 0.56 -0.9 81,216 + Rv0072 0.56 -1.7 81,216 + Rv0072 0.56 +0.6 81,216 + Rv0072 0.56 +4.7 81,217 - Rv0072 0.56 +0.9 81,217 - Rv0072 0.56 +0.0 81,217 - Rv0072 0.56 -0.1 81,217 - Rv0072 0.56 -1.4 81,220 + Rv0072 0.57 -3.0 81,221 - Rv0072 0.57 -0.7 81,221 - Rv0072 0.57 -0.8 81,374 + Rv0072 0.71 -1.1 81,374 + Rv0072 0.71 -0.4 81,374 + Rv0072 0.71 -0.9 81,396 + Rv0072 0.74 -0.4 81,396 + Rv0072 0.74 -0.3 81,396 + Rv0072 0.74 -2.2 81,396 + Rv0072 0.74 -0.1 81,445 + Rv0072 0.78 +0.3 81,462 + Rv0072 0.80 -1.1 81,567 - Rv0072 0.90 -0.2 81,567 - Rv0072 0.90 +0.2 81,567 - Rv0072 0.90 +1.9 81,715 + -1.0 81,716 - -0.6 81,716 - -0.9 81,716 - +0.4 81,716 - +0.0 81,727 + -2.0 81,735 + -0.3 81,896 + Rv0073 0.22 -0.6 81,896 + Rv0073 0.22 -1.1 81,897 - Rv0073 0.22 +0.0 81,897 - Rv0073 0.22 -1.1 81,927 + Rv0073 0.25 -1.1 81,927 + Rv0073 0.25 +4.5 81,928 - Rv0073 0.25 -1.1 81,928 - Rv0073 0.25 -1.8 82,004 + Rv0073 0.33 -0.6 82,005 - Rv0073 0.33 -0.0 82,362 - Rv0073 0.69 -1.1 82,417 + Rv0073 0.75 -0.6 82,505 - Rv0073 0.83 +1.0 82,585 + +0.9 82,586 - -0.3 82,587 + -0.7 82,588 - -1.5 82,588 - +1.6 82,666 + +0.3
Or see this region's nucleotide sequence