Experiment: Urea 10mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0309 and Rv0310c are separated by 69 nucleotides Rv0310c and Rv0311 are separated by 23 nucleotides Rv0311 and Rv0312 are separated by 154 nucleotides
Rv0309: Rv0309 - Possible conserved exported protein, at 377,931 to 378,587
Rv0309
Rv0310c: Rv0310c - Conserved protein, at 378,657 to 379,148
Rv0310c
Rv0311: Rv0311 - Unknown protein, at 379,172 to 380,401
Rv0311
Rv0312: Rv0312 - Conserved hypothetical proline and threonine rich protein, at 380,556 to 382,418
Rv0312
Position (kb) 379
380
381 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 378.278 kb on + strand, within Rv0309 at 379.004 kb on - strand, within Rv0310c at 379.075 kb on + strand, within Rv0310c at 379.081 kb on + strand, within Rv0310c at 379.187 kb on + strand at 379.279 kb on + strand at 379.280 kb on - strand at 379.280 kb on - strand at 379.349 kb on + strand, within Rv0311 at 379.350 kb on - strand, within Rv0311 at 379.544 kb on + strand, within Rv0311 at 379.544 kb on + strand, within Rv0311 at 380.076 kb on + strand, within Rv0311 at 380.555 kb on + strand at 380.555 kb on + strand at 380.903 kb on - strand, within Rv0312
Per-strain Table
Position Strand Gene LocusTag Fraction Urea 10mM (N) remove 378,278 + Rv0309 0.53 -1.3 379,004 - Rv0310c 0.71 -0.9 379,075 + Rv0310c 0.85 -0.7 379,081 + Rv0310c 0.86 -0.3 379,187 + -0.2 379,279 + +0.2 379,280 - -0.1 379,280 - -0.7 379,349 + Rv0311 0.14 +0.5 379,350 - Rv0311 0.14 +1.7 379,544 + Rv0311 0.30 +0.1 379,544 + Rv0311 0.30 +4.0 380,076 + Rv0311 0.73 +0.6 380,555 + -0.5 380,555 + -0.0 380,903 - Rv0312 0.19 -0.4
Or see this region's nucleotide sequence