Experiment: Urea 10mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0301 and Rv0302 are separated by 135 nucleotides Rv0302 and Rv0303 overlap by 4 nucleotides Rv0303 and Rv0304c are separated by 7 nucleotides
Rv0301: Rv0301 - Possible toxin VapC2, at 364,044 to 364,469
Rv0301
Rv0302: Rv0302 - Probable transcriptional regulatory protein (probably TetR/AcrR-family), at 364,605 to 365,237
Rv0302
Rv0303: Rv0303 - Probable dehydrogenase/reductase, at 365,234 to 366,142
Rv0303
Rv0304c: Rv0304c - PPE family protein PPE5, at 366,150 to 372,764
Rv0304c
Position (kb) 365
366
367 Strain fitness (log2 ratio) -2
-1
0
1
2 at 364.251 kb on + strand, within Rv0301 at 364.251 kb on + strand, within Rv0301 at 364.252 kb on - strand, within Rv0301 at 364.252 kb on - strand, within Rv0301 at 364.252 kb on - strand, within Rv0301 at 364.256 kb on - strand, within Rv0301 at 364.256 kb on - strand, within Rv0301 at 364.256 kb on - strand, within Rv0301 at 364.381 kb on + strand, within Rv0301 at 364.382 kb on - strand, within Rv0301 at 364.382 kb on - strand, within Rv0301 at 364.568 kb on - strand at 364.741 kb on + strand, within Rv0302 at 364.755 kb on - strand, within Rv0302 at 364.755 kb on - strand, within Rv0302 at 364.758 kb on + strand, within Rv0302 at 364.942 kb on - strand, within Rv0302 at 365.131 kb on - strand, within Rv0302 at 365.178 kb on + strand at 365.179 kb on - strand at 365.179 kb on - strand at 365.304 kb on + strand at 365.565 kb on + strand, within Rv0303 at 365.693 kb on + strand, within Rv0303 at 365.695 kb on + strand, within Rv0303 at 365.696 kb on - strand, within Rv0303 at 365.696 kb on - strand, within Rv0303 at 365.696 kb on - strand, within Rv0303 at 365.762 kb on + strand, within Rv0303 at 365.762 kb on + strand, within Rv0303 at 365.798 kb on + strand, within Rv0303 at 365.799 kb on - strand, within Rv0303 at 365.865 kb on + strand, within Rv0303 at 365.918 kb on + strand, within Rv0303 at 365.918 kb on + strand, within Rv0303 at 366.077 kb on + strand at 366.140 kb on + strand at 366.140 kb on + strand at 366.140 kb on + strand at 366.141 kb on - strand at 366.141 kb on - strand at 366.141 kb on - strand at 366.141 kb on - strand at 366.159 kb on - strand at 366.189 kb on - strand at 366.452 kb on - strand at 366.482 kb on - strand at 366.735 kb on - strand at 366.735 kb on - strand at 366.887 kb on + strand, within Rv0304c at 366.908 kb on - strand, within Rv0304c at 366.908 kb on - strand, within Rv0304c at 366.968 kb on - strand, within Rv0304c at 366.968 kb on - strand, within Rv0304c at 367.027 kb on + strand, within Rv0304c at 367.027 kb on + strand, within Rv0304c
Per-strain Table
Position Strand Gene LocusTag Fraction Urea 10mM (N) remove 364,251 + Rv0301 0.49 -0.3 364,251 + Rv0301 0.49 -0.2 364,252 - Rv0301 0.49 +0.4 364,252 - Rv0301 0.49 -1.9 364,252 - Rv0301 0.49 -0.5 364,256 - Rv0301 0.50 -0.4 364,256 - Rv0301 0.50 +0.4 364,256 - Rv0301 0.50 -0.7 364,381 + Rv0301 0.79 -0.4 364,382 - Rv0301 0.79 -0.5 364,382 - Rv0301 0.79 -0.5 364,568 - -0.4 364,741 + Rv0302 0.21 -0.1 364,755 - Rv0302 0.24 -1.3 364,755 - Rv0302 0.24 -0.4 364,758 + Rv0302 0.24 +0.4 364,942 - Rv0302 0.53 +0.5 365,131 - Rv0302 0.83 +1.7 365,178 + -1.2 365,179 - +0.1 365,179 - -0.2 365,304 + +0.1 365,565 + Rv0303 0.36 -0.4 365,693 + Rv0303 0.50 -0.0 365,695 + Rv0303 0.51 -0.3 365,696 - Rv0303 0.51 +0.0 365,696 - Rv0303 0.51 -0.2 365,696 - Rv0303 0.51 +0.3 365,762 + Rv0303 0.58 -0.2 365,762 + Rv0303 0.58 +0.9 365,798 + Rv0303 0.62 +1.9 365,799 - Rv0303 0.62 -1.3 365,865 + Rv0303 0.69 +0.3 365,918 + Rv0303 0.75 -1.3 365,918 + Rv0303 0.75 -0.0 366,077 + -0.3 366,140 + +0.0 366,140 + -0.4 366,140 + -0.5 366,141 - -0.0 366,141 - -0.6 366,141 - +0.2 366,141 - -0.3 366,159 - +0.5 366,189 - +0.7 366,452 - -1.0 366,482 - -0.2 366,735 - -2.5 366,735 - +1.7 366,887 + Rv0304c 0.11 -0.2 366,908 - Rv0304c 0.11 -0.3 366,908 - Rv0304c 0.11 -0.2 366,968 - Rv0304c 0.12 -0.3 366,968 - Rv0304c 0.12 -0.8 367,027 + Rv0304c 0.13 +0.7 367,027 + Rv0304c 0.13 -0.6
Or see this region's nucleotide sequence