Experiment: Ammonium chloride 10mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0469 and Rv0470c are separated by 99 nucleotides Rv0470c and Rv0470A are separated by 142 nucleotides Rv0470A and Rv0471c overlap by 70 nucleotides
Rv0469: Rv0469 - Possible mycolic acid synthase UmaA, at 559,888 to 560,748
Rv0469
Rv0470c: Rv0470c - Mycolic acid synthase PcaA (cyclopropane synthase), at 560,848 to 561,711
Rv0470c
Rv0470A: Rv0470A - Hypothetical protein, at 561,854 to 562,294
Rv0470A
Rv0471c: Rv0471c - Hypothetical protein, at 562,225 to 562,713
Rv0471c
Position (kb) 560
561
562 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 559.853 kb on - strand at 559.910 kb on - strand at 559.931 kb on - strand at 559.981 kb on + strand, within Rv0469 at 559.982 kb on - strand, within Rv0469 at 560.140 kb on + strand, within Rv0469 at 560.140 kb on + strand, within Rv0469 at 560.141 kb on - strand, within Rv0469 at 560.160 kb on + strand, within Rv0469 at 560.161 kb on - strand, within Rv0469 at 560.188 kb on + strand, within Rv0469 at 560.354 kb on + strand, within Rv0469 at 560.591 kb on + strand, within Rv0469 at 560.620 kb on - strand, within Rv0469 at 560.668 kb on + strand at 560.669 kb on - strand at 560.747 kb on - strand at 560.747 kb on - strand at 560.927 kb on + strand at 560.928 kb on - strand at 560.936 kb on + strand, within Rv0470c at 560.937 kb on - strand, within Rv0470c at 561.017 kb on + strand, within Rv0470c at 561.272 kb on + strand, within Rv0470c at 561.615 kb on - strand, within Rv0470c at 561.798 kb on + strand at 561.798 kb on + strand at 561.799 kb on - strand at 561.952 kb on + strand, within Rv0470A at 561.953 kb on - strand, within Rv0470A at 561.953 kb on - strand, within Rv0470A at 562.091 kb on + strand, within Rv0470A at 562.099 kb on + strand, within Rv0470A at 562.100 kb on - strand, within Rv0470A at 562.100 kb on - strand, within Rv0470A at 562.100 kb on - strand, within Rv0470A at 562.103 kb on + strand, within Rv0470A at 562.103 kb on + strand, within Rv0470A at 562.103 kb on + strand, within Rv0470A at 562.103 kb on + strand, within Rv0470A at 562.104 kb on - strand, within Rv0470A at 562.104 kb on - strand, within Rv0470A at 562.104 kb on - strand, within Rv0470A at 562.104 kb on - strand, within Rv0470A at 562.107 kb on + strand, within Rv0470A at 562.160 kb on + strand, within Rv0470A at 562.197 kb on + strand, within Rv0470A at 562.219 kb on + strand, within Rv0470A at 562.219 kb on + strand, within Rv0470A at 562.302 kb on + strand, within Rv0471c at 562.303 kb on - strand, within Rv0471c at 562.303 kb on - strand, within Rv0471c at 562.303 kb on - strand, within Rv0471c at 562.303 kb on - strand, within Rv0471c at 562.305 kb on + strand, within Rv0471c at 562.305 kb on + strand, within Rv0471c at 562.305 kb on + strand, within Rv0471c at 562.306 kb on - strand, within Rv0471c at 562.306 kb on - strand, within Rv0471c at 562.306 kb on - strand, within Rv0471c at 562.306 kb on - strand, within Rv0471c at 562.359 kb on + strand, within Rv0471c at 562.359 kb on + strand, within Rv0471c at 562.359 kb on + strand, within Rv0471c at 562.360 kb on - strand, within Rv0471c at 562.360 kb on - strand, within Rv0471c at 562.360 kb on - strand, within Rv0471c at 562.360 kb on - strand, within Rv0471c at 562.360 kb on - strand, within Rv0471c at 562.360 kb on - strand, within Rv0471c at 562.361 kb on + strand, within Rv0471c at 562.361 kb on + strand, within Rv0471c at 562.361 kb on + strand, within Rv0471c at 562.361 kb on + strand, within Rv0471c at 562.362 kb on - strand, within Rv0471c at 562.362 kb on - strand, within Rv0471c at 562.362 kb on - strand, within Rv0471c at 562.362 kb on - strand, within Rv0471c at 562.362 kb on - strand, within Rv0471c at 562.403 kb on + strand, within Rv0471c at 562.404 kb on - strand, within Rv0471c at 562.418 kb on + strand, within Rv0471c at 562.418 kb on + strand, within Rv0471c at 562.451 kb on + strand, within Rv0471c at 562.452 kb on - strand, within Rv0471c at 562.464 kb on + strand, within Rv0471c at 562.464 kb on + strand, within Rv0471c at 562.464 kb on + strand, within Rv0471c at 562.464 kb on + strand, within Rv0471c at 562.464 kb on + strand, within Rv0471c at 562.465 kb on - strand, within Rv0471c at 562.465 kb on - strand, within Rv0471c at 562.465 kb on - strand, within Rv0471c at 562.670 kb on + strand at 562.671 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride 10mM (N) remove 559,853 - -0.4 559,910 - +0.0 559,931 - -0.1 559,981 + Rv0469 0.11 -0.2 559,982 - Rv0469 0.11 +0.1 560,140 + Rv0469 0.29 +0.3 560,140 + Rv0469 0.29 +1.9 560,141 - Rv0469 0.29 -1.6 560,160 + Rv0469 0.32 -2.2 560,161 - Rv0469 0.32 +0.6 560,188 + Rv0469 0.35 -1.4 560,354 + Rv0469 0.54 -0.1 560,591 + Rv0469 0.82 -0.0 560,620 - Rv0469 0.85 -0.7 560,668 + -0.3 560,669 - +1.1 560,747 - -0.2 560,747 - -0.0 560,927 + -0.3 560,928 - -1.5 560,936 + Rv0470c 0.10 -1.2 560,937 - Rv0470c 0.10 +4.5 561,017 + Rv0470c 0.20 -0.2 561,272 + Rv0470c 0.49 -1.2 561,615 - Rv0470c 0.89 -1.6 561,798 + +0.4 561,798 + -0.0 561,799 - +0.4 561,952 + Rv0470A 0.22 -0.8 561,953 - Rv0470A 0.22 +0.2 561,953 - Rv0470A 0.22 +0.0 562,091 + Rv0470A 0.54 -0.7 562,099 + Rv0470A 0.56 -0.7 562,100 - Rv0470A 0.56 -0.6 562,100 - Rv0470A 0.56 +0.7 562,100 - Rv0470A 0.56 -0.2 562,103 + Rv0470A 0.56 +0.5 562,103 + Rv0470A 0.56 -0.4 562,103 + Rv0470A 0.56 -0.2 562,103 + Rv0470A 0.56 -2.0 562,104 - Rv0470A 0.57 -0.5 562,104 - Rv0470A 0.57 -0.9 562,104 - Rv0470A 0.57 -1.3 562,104 - Rv0470A 0.57 -0.4 562,107 + Rv0470A 0.57 -0.3 562,160 + Rv0470A 0.69 -0.1 562,197 + Rv0470A 0.78 +1.5 562,219 + Rv0470A 0.83 -0.1 562,219 + Rv0470A 0.83 +0.2 562,302 + Rv0471c 0.16 -2.0 562,303 - Rv0471c 0.16 -0.5 562,303 - Rv0471c 0.16 -0.5 562,303 - Rv0471c 0.16 -0.8 562,303 - Rv0471c 0.16 -0.1 562,305 + Rv0471c 0.16 +2.7 562,305 + Rv0471c 0.16 +0.1 562,305 + Rv0471c 0.16 -0.8 562,306 - Rv0471c 0.17 -0.2 562,306 - Rv0471c 0.17 -0.7 562,306 - Rv0471c 0.17 -0.6 562,306 - Rv0471c 0.17 +1.1 562,359 + Rv0471c 0.27 -0.4 562,359 + Rv0471c 0.27 -0.1 562,359 + Rv0471c 0.27 +0.9 562,360 - Rv0471c 0.28 -1.8 562,360 - Rv0471c 0.28 +0.6 562,360 - Rv0471c 0.28 +0.3 562,360 - Rv0471c 0.28 +1.9 562,360 - Rv0471c 0.28 -0.1 562,360 - Rv0471c 0.28 -0.4 562,361 + Rv0471c 0.28 -0.5 562,361 + Rv0471c 0.28 -0.7 562,361 + Rv0471c 0.28 +1.0 562,361 + Rv0471c 0.28 -0.3 562,362 - Rv0471c 0.28 -1.0 562,362 - Rv0471c 0.28 -0.7 562,362 - Rv0471c 0.28 -2.2 562,362 - Rv0471c 0.28 +1.2 562,362 - Rv0471c 0.28 +1.0 562,403 + Rv0471c 0.36 -0.3 562,404 - Rv0471c 0.37 -1.6 562,418 + Rv0471c 0.39 -3.2 562,418 + Rv0471c 0.39 -1.8 562,451 + Rv0471c 0.46 +0.9 562,452 - Rv0471c 0.46 -0.3 562,464 + Rv0471c 0.49 -0.4 562,464 + Rv0471c 0.49 -2.1 562,464 + Rv0471c 0.49 +0.6 562,464 + Rv0471c 0.49 -0.4 562,464 + Rv0471c 0.49 +0.2 562,465 - Rv0471c 0.49 +1.5 562,465 - Rv0471c 0.49 +0.9 562,465 - Rv0471c 0.49 +1.8 562,670 + +0.3 562,671 - +1.7
Or see this region's nucleotide sequence