Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1178

Experiment: 7H9 with Pyrazinamide 50 ug/mL; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Pyrazinamide 50 ug/mL; pH 5.5
1,308,426	+		Rv1176c	0.36	-0.7
1,308,589	+		Rv1176c	0.64	+0.6
1,308,589	+		Rv1176c	0.64	-0.4
1,308,589	+		Rv1176c	0.64	+0.1
1,308,671	+		Rv1176c	0.79	+0.2
1,308,672	-		Rv1176c	0.79	-0.9
1,308,738	-				+0.4
1,308,831	+				+0.8
1,308,840	-				+0.8
1,308,840	-				+1.7
1,308,840	-				+0.0
1,308,850	+				-0.8
1,308,896	-				-0.1
1,308,898	+				+0.0
1,308,970	+				-1.8
1,308,970	+				-0.3
1,308,976	+				+0.5
1,308,976	+				-0.2
1,308,976	+				-0.2
1,308,976	+				+0.6
1,309,719	-		Rv1178	0.33	-0.3
1,309,815	-		Rv1178	0.41	-1.2
1,309,966	-		Rv1178	0.55	-0.9
1,310,094	+		Rv1178	0.67	-1.0
1,310,095	-		Rv1178	0.67	-0.4
1,310,147	-		Rv1178	0.72	-1.7
1,310,280	+		Rv1178	0.84	+0.1
1,310,281	-		Rv1178	0.84	+0.1
1,310,801	+		Rv1179c	0.11	-2.2
1,310,801	+		Rv1179c	0.11	+1.4
1,310,802	-		Rv1179c	0.11	+0.9
1,311,280	-		Rv1179c	0.28	-0.4
1,311,447	+		Rv1179c	0.34	+0.3
1,311,448	-		Rv1179c	0.34	+0.1