Experiment: 7H9 with Pyrazinamide 50 ug/mL; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0853c and Rv0854 are separated by 64 nucleotides Rv0854 and Rv0855 are separated by 5 nucleotides
Rv0853c: Rv0853c - Probable pyruvate or indole-3-pyruvate decarboxylase Pdc, at 949,436 to 951,118
Rv0853c
Rv0854: Rv0854 - Conserved protein, at 951,183 to 951,626
Rv0854
Rv0855: Rv0855 - Probable fatty-acid-CoA racemase Far, at 951,632 to 952,711
Rv0855
Position (kb) 951
952 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 950.314 kb on - strand, within Rv0853c at 950.597 kb on + strand, within Rv0853c at 950.597 kb on + strand, within Rv0853c at 950.597 kb on + strand, within Rv0853c at 950.597 kb on + strand, within Rv0853c at 950.597 kb on + strand, within Rv0853c at 950.598 kb on - strand, within Rv0853c at 950.598 kb on - strand, within Rv0853c at 950.598 kb on - strand, within Rv0853c at 950.598 kb on - strand, within Rv0853c at 951.003 kb on + strand at 951.060 kb on - strand at 951.060 kb on - strand at 951.078 kb on + strand at 951.078 kb on + strand at 951.130 kb on + strand at 951.131 kb on - strand at 951.146 kb on + strand at 951.171 kb on + strand at 951.208 kb on + strand at 951.208 kb on + strand at 951.208 kb on + strand at 951.209 kb on - strand at 951.213 kb on - strand at 951.388 kb on - strand, within Rv0854 at 951.388 kb on - strand, within Rv0854 at 951.388 kb on - strand, within Rv0854 at 951.389 kb on + strand, within Rv0854 at 951.389 kb on + strand, within Rv0854 at 951.389 kb on + strand, within Rv0854 at 951.459 kb on + strand, within Rv0854 at 952.025 kb on + strand, within Rv0855 at 952.154 kb on + strand, within Rv0855 at 952.308 kb on - strand, within Rv0855 at 952.337 kb on + strand, within Rv0855 at 952.337 kb on + strand, within Rv0855 at 952.338 kb on - strand, within Rv0855 at 952.338 kb on - strand, within Rv0855 at 952.338 kb on - strand, within Rv0855 at 952.451 kb on + strand, within Rv0855 at 952.451 kb on + strand, within Rv0855 at 952.452 kb on - strand, within Rv0855 at 952.452 kb on - strand, within Rv0855 at 952.452 kb on - strand, within Rv0855 at 952.531 kb on + strand, within Rv0855 at 952.531 kb on + strand, within Rv0855
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Pyrazinamide 50 ug/mL; pH 5.5 remove 950,314 - Rv0853c 0.52 +0.2 950,597 + Rv0853c 0.69 +0.1 950,597 + Rv0853c 0.69 -0.9 950,597 + Rv0853c 0.69 -0.4 950,597 + Rv0853c 0.69 -1.0 950,597 + Rv0853c 0.69 +1.3 950,598 - Rv0853c 0.69 +3.3 950,598 - Rv0853c 0.69 -0.4 950,598 - Rv0853c 0.69 -0.1 950,598 - Rv0853c 0.69 -1.1 951,003 + +0.0 951,060 - -0.4 951,060 - -0.8 951,078 + -2.0 951,078 + -0.8 951,130 + -0.4 951,131 - -1.5 951,146 + -0.2 951,171 + +1.5 951,208 + -1.6 951,208 + -0.8 951,208 + -0.3 951,209 - -0.2 951,213 - +1.5 951,388 - Rv0854 0.46 -0.5 951,388 - Rv0854 0.46 +0.4 951,388 - Rv0854 0.46 +0.0 951,389 + Rv0854 0.46 +1.8 951,389 + Rv0854 0.46 +0.3 951,389 + Rv0854 0.46 +0.9 951,459 + Rv0854 0.62 -0.1 952,025 + Rv0855 0.36 -0.6 952,154 + Rv0855 0.48 -2.2 952,308 - Rv0855 0.63 -2.3 952,337 + Rv0855 0.65 -0.3 952,337 + Rv0855 0.65 +0.0 952,338 - Rv0855 0.65 -1.5 952,338 - Rv0855 0.65 -0.3 952,338 - Rv0855 0.65 -0.6 952,451 + Rv0855 0.76 -0.4 952,451 + Rv0855 0.76 -0.2 952,452 - Rv0855 0.76 -0.4 952,452 - Rv0855 0.76 -0.0 952,452 - Rv0855 0.76 +0.0 952,531 + Rv0855 0.83 -0.8 952,531 + Rv0855 0.83 -1.0
Or see this region's nucleotide sequence