Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3194c

Experiment: 7H9 with Pyrazinamide 50 ug/mL; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Pyrazinamide 50 ug/mL; pH 5.5
3,562,479	-		Rv3193c	0.77	+1.8
3,563,266	-				+1.5
3,563,323	+				-2.4
3,563,643	-		Rv3194c	0.37	-1.0
3,563,671	+		Rv3194c	0.40	-1.2
3,563,671	+		Rv3194c	0.40	-1.1
3,563,672	-		Rv3194c	0.40	-1.0
3,563,916	+		Rv3194c	0.64	-2.5
3,563,994	+		Rv3194c	0.71	+0.3
3,564,062	+		Rv3194c	0.78	-0.8
3,564,063	-		Rv3194c	0.78	-0.9
3,564,114	+		Rv3194c	0.83	-0.8
3,564,155	+		Rv3194c	0.87	-0.0
3,564,213	-				+0.3
3,564,272	+				+0.4
3,564,293	+				+0.3
3,564,293	+				-2.1
3,564,293	+				-0.8
3,564,294	-				+0.1
3,564,447	+				-0.2
3,564,622	+		Rv3195	0.18	-1.0
3,564,623	-		Rv3195	0.18	+0.0
3,564,814	-		Rv3195	0.32	+1.0
3,564,938	+		Rv3195	0.40	+0.2
3,564,938	+		Rv3195	0.40	+0.9
3,564,999	+		Rv3195	0.45	-0.5
3,565,195	+		Rv3195	0.59	+1.7
3,565,196	-		Rv3195	0.59	+0.4
3,565,196	-		Rv3195	0.59	-0.6