Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1962c

Experiment: 7H9 with Pyrazinamide 50 ug/mL; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Pyrazinamide 50 ug/mL; pH 5.5
2,203,877	+		Rv1959c	0.66	+0.1
2,203,877	+		Rv1959c	0.66	+0.0
2,203,877	+		Rv1959c	0.66	+2.0
2,203,878	-		Rv1959c	0.66	-0.3
2,203,910	+		Rv1959c	0.77	-0.9
2,203,910	+		Rv1959c	0.77	-0.5
2,203,911	-		Rv1959c	0.77	-1.5
2,203,911	-		Rv1959c	0.77	-0.3
2,203,964	+				+0.8
2,203,964	+				+0.9
2,204,003	+		Rv1960c	0.12	-0.5
2,204,003	+		Rv1960c	0.12	-1.6
2,204,188	+		Rv1960c	0.85	-0.1
2,204,188	+		Rv1960c	0.85	-0.4
2,204,219	+				+0.3
2,204,249	+				-0.6
2,204,259	+				-0.5
2,204,389	+		Rv1961	0.36	+0.2
2,204,390	-		Rv1961	0.36	-0.9
2,204,401	+		Rv1961	0.38	-0.0
2,204,402	-		Rv1961	0.38	-0.2
2,204,402	-		Rv1961	0.38	-0.4
2,204,402	-		Rv1961	0.38	-0.5
2,204,638	+		Rv1961	0.86	-0.1
2,204,728	+				-0.0
2,204,783	-				+1.3
2,204,787	+				+0.0
2,204,923	-		Rv1962c	0.14	-0.2
2,204,936	+		Rv1962c	0.17	-0.7
2,204,937	-		Rv1962c	0.17	-2.1
2,204,989	+		Rv1962c	0.30	-0.5
2,204,989	+		Rv1962c	0.30	-0.5
2,204,995	+		Rv1962c	0.32	-1.9
2,205,049	+		Rv1962c	0.45	-0.1
2,205,143	-		Rv1962c	0.68	+0.1
2,205,143	-		Rv1962c	0.68	-0.1
2,205,143	-		Rv1962c	0.68	-1.6
2,205,208	+		Rv1962c	0.84	-0.8
2,205,238	+				+0.0
2,205,267	-				-2.3
2,205,281	+				+0.1
2,205,437	-		Rv1962A	0.59	-1.1
2,205,599	+				-0.2
2,205,599	+				-0.2
2,205,599	+				+0.0
2,205,600	-				-0.1