Experiment: 7H9 pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0594 and Rv0595c are separated by 51 nucleotides Rv0595c and Rv0596c overlap by 4 nucleotides Rv0596c and Rv0597c are separated by 182 nucleotides
Rv0594: Rv0594 - Mce-family protein Mce2F, at 693,237 to 694,787
Rv0594
Rv0595c: Rv0595c - Possible toxin VapC4, at 694,839 to 695,231
Rv0595c
Rv0596c: Rv0596c - Possible antitoxin VapB4, at 695,228 to 695,485
Rv0596c
Rv0597c: Rv0597c - Conserved hypothetical protein, at 695,668 to 696,903
Rv0597c
Position (kb) 694
695
696 Strain fitness (log2 ratio) -1
0
1
2 at 694.133 kb on + strand, within Rv0594 at 694.136 kb on + strand, within Rv0594 at 694.137 kb on - strand, within Rv0594 at 694.279 kb on - strand, within Rv0594 at 694.339 kb on + strand, within Rv0594 at 694.340 kb on - strand, within Rv0594 at 694.395 kb on + strand, within Rv0594 at 694.395 kb on + strand, within Rv0594 at 694.395 kb on + strand, within Rv0594 at 694.396 kb on - strand, within Rv0594 at 694.645 kb on - strand at 694.645 kb on - strand at 694.664 kb on + strand at 694.664 kb on + strand at 694.665 kb on - strand at 694.665 kb on - strand at 694.665 kb on - strand at 694.665 kb on - strand at 694.665 kb on - strand at 694.675 kb on - strand at 694.700 kb on - strand at 694.700 kb on - strand at 694.700 kb on - strand at 694.700 kb on - strand at 694.720 kb on - strand at 694.848 kb on + strand at 694.986 kb on + strand, within Rv0595c at 694.986 kb on + strand, within Rv0595c at 695.022 kb on + strand, within Rv0595c at 695.050 kb on + strand, within Rv0595c at 695.051 kb on - strand, within Rv0595c at 695.223 kb on + strand at 695.223 kb on + strand at 695.556 kb on - strand at 695.789 kb on + strand at 695.789 kb on + strand at 695.794 kb on + strand, within Rv0597c at 695.794 kb on + strand, within Rv0597c at 695.794 kb on + strand, within Rv0597c at 695.984 kb on - strand, within Rv0597c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 pH 5.5 remove 694,133 + Rv0594 0.58 -0.2 694,136 + Rv0594 0.58 -0.3 694,137 - Rv0594 0.58 +1.1 694,279 - Rv0594 0.67 -0.4 694,339 + Rv0594 0.71 -0.1 694,340 - Rv0594 0.71 +0.1 694,395 + Rv0594 0.75 +0.1 694,395 + Rv0594 0.75 +0.2 694,395 + Rv0594 0.75 +1.6 694,396 - Rv0594 0.75 -0.7 694,645 - +1.5 694,645 - -1.5 694,664 + -0.2 694,664 + -1.1 694,665 - +0.3 694,665 - -0.3 694,665 - -0.2 694,665 - -0.2 694,665 - +0.1 694,675 - -0.3 694,700 - -0.2 694,700 - +1.8 694,700 - -0.2 694,700 - -1.7 694,720 - +0.8 694,848 + -0.4 694,986 + Rv0595c 0.37 +0.8 694,986 + Rv0595c 0.37 -0.8 695,022 + Rv0595c 0.47 -1.5 695,050 + Rv0595c 0.54 -0.8 695,051 - Rv0595c 0.54 +0.6 695,223 + +0.6 695,223 + +0.1 695,556 - -1.2 695,789 + -0.6 695,789 + -0.6 695,794 + Rv0597c 0.10 -0.6 695,794 + Rv0597c 0.10 -1.0 695,794 + Rv0597c 0.10 -0.1 695,984 - Rv0597c 0.26 -0.2
Or see this region's nucleotide sequence