Experiment: 7H9 with Cumene hydroperoxide 0.05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0452 and Rv0453 are separated by 321 nucleotides Rv0453 and Rv0454 are separated by 104 nucleotides Rv0454 and Rv0455c are separated by 189 nucleotides
Rv0452: Rv0452 - Possible transcriptional regulatory protein, at 542,142 to 542,852
Rv0452
Rv0453: Rv0453 - PPE family protein PPE11, at 543,174 to 544,730
Rv0453
Rv0454: Rv0454 - Conserved hypothetical protein, at 544,835 to 545,185
Rv0454
Rv0455c: Rv0455c - Conserved protein, at 545,375 to 545,821
Rv0455c
Position (kb) 543
544
545 Strain fitness (log2 ratio) -2
-1
0
1
2 at 542.399 kb on - strand, within Rv0452 at 542.582 kb on - strand, within Rv0452 at 542.658 kb on + strand, within Rv0452 at 542.719 kb on - strand, within Rv0452 at 543.071 kb on + strand at 543.072 kb on - strand at 543.072 kb on - strand at 543.072 kb on - strand at 543.084 kb on + strand at 543.108 kb on + strand at 543.173 kb on + strand at 543.173 kb on + strand at 543.174 kb on - strand at 543.174 kb on - strand at 543.191 kb on - strand at 543.191 kb on - strand at 543.233 kb on + strand at 543.297 kb on + strand at 543.399 kb on + strand, within Rv0453 at 543.577 kb on + strand, within Rv0453 at 543.577 kb on + strand, within Rv0453 at 543.578 kb on - strand, within Rv0453 at 543.604 kb on - strand, within Rv0453 at 543.646 kb on - strand, within Rv0453 at 543.746 kb on + strand, within Rv0453 at 543.747 kb on - strand, within Rv0453 at 543.868 kb on - strand, within Rv0453 at 543.869 kb on + strand, within Rv0453 at 543.870 kb on - strand, within Rv0453 at 544.010 kb on + strand, within Rv0453 at 544.010 kb on + strand, within Rv0453 at 544.011 kb on - strand, within Rv0453 at 544.011 kb on - strand, within Rv0453 at 544.031 kb on + strand, within Rv0453 at 544.130 kb on - strand, within Rv0453 at 544.326 kb on + strand, within Rv0453 at 544.512 kb on - strand, within Rv0453 at 544.732 kb on + strand at 544.733 kb on - strand at 544.737 kb on + strand at 544.737 kb on + strand at 544.738 kb on - strand at 544.738 kb on - strand at 544.924 kb on + strand, within Rv0454 at 544.924 kb on + strand, within Rv0454 at 544.925 kb on - strand, within Rv0454 at 544.925 kb on - strand, within Rv0454 at 544.935 kb on - strand, within Rv0454 at 544.935 kb on - strand, within Rv0454 at 544.956 kb on + strand, within Rv0454 at 544.956 kb on + strand, within Rv0454 at 544.957 kb on - strand, within Rv0454 at 544.957 kb on - strand, within Rv0454 at 545.101 kb on + strand, within Rv0454 at 545.102 kb on - strand, within Rv0454 at 545.102 kb on - strand, within Rv0454 at 545.102 kb on - strand, within Rv0454 at 545.126 kb on - strand, within Rv0454 at 545.183 kb on + strand at 545.190 kb on - strand at 545.377 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Cumene hydroperoxide 0.05 mM remove 542,399 - Rv0452 0.36 -0.7 542,582 - Rv0452 0.62 -1.5 542,658 + Rv0452 0.73 -1.3 542,719 - Rv0452 0.81 -0.6 543,071 + -0.0 543,072 - +2.6 543,072 - +0.2 543,072 - -0.5 543,084 + +0.2 543,108 + -1.6 543,173 + -0.6 543,173 + +0.6 543,174 - -1.3 543,174 - -0.4 543,191 - -0.5 543,191 - -1.0 543,233 + -0.8 543,297 + +0.1 543,399 + Rv0453 0.14 -0.3 543,577 + Rv0453 0.26 +0.1 543,577 + Rv0453 0.26 -1.9 543,578 - Rv0453 0.26 +0.2 543,604 - Rv0453 0.28 -1.2 543,646 - Rv0453 0.30 -0.2 543,746 + Rv0453 0.37 -0.5 543,747 - Rv0453 0.37 -1.5 543,868 - Rv0453 0.45 +0.4 543,869 + Rv0453 0.45 -0.6 543,870 - Rv0453 0.45 -1.2 544,010 + Rv0453 0.54 +0.4 544,010 + Rv0453 0.54 +0.6 544,011 - Rv0453 0.54 -0.8 544,011 - Rv0453 0.54 -0.9 544,031 + Rv0453 0.55 -1.0 544,130 - Rv0453 0.61 -1.1 544,326 + Rv0453 0.74 -0.6 544,512 - Rv0453 0.86 -0.7 544,732 + -0.3 544,733 - -1.0 544,737 + +0.2 544,737 + -1.7 544,738 - -0.2 544,738 - +0.7 544,924 + Rv0454 0.25 -0.0 544,924 + Rv0454 0.25 -0.5 544,925 - Rv0454 0.26 -0.3 544,925 - Rv0454 0.26 +0.7 544,935 - Rv0454 0.28 +0.3 544,935 - Rv0454 0.28 -0.8 544,956 + Rv0454 0.34 +1.8 544,956 + Rv0454 0.34 -0.2 544,957 - Rv0454 0.35 -1.0 544,957 - Rv0454 0.35 -0.4 545,101 + Rv0454 0.76 +0.3 545,102 - Rv0454 0.76 -0.9 545,102 - Rv0454 0.76 +0.1 545,102 - Rv0454 0.76 +1.5 545,126 - Rv0454 0.83 -0.8 545,183 + +0.0 545,190 - -0.8 545,377 - +1.0
Or see this region's nucleotide sequence