Experiment: 7H9 with Cumene hydroperoxide 0.05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0876c and Rv0877 are separated by 137 nucleotides Rv0877 and Rv0878c are separated by 8 nucleotides
Rv0876c: Rv0876c - Possible conserved transmembrane protein, at 974,291 to 975,937
Rv0876c
Rv0877: Rv0877 - Conserved hypothetical protein, at 976,075 to 976,863
Rv0877
Rv0878c: Rv0878c - PPE family protein PPE13, at 976,872 to 978,203
Rv0878c
Position (kb) 976
977 Strain fitness (log2 ratio) -1
0
1
2 at 975.746 kb on - strand, within Rv0876c at 975.850 kb on - strand at 975.850 kb on - strand at 975.850 kb on - strand at 975.850 kb on - strand at 975.850 kb on - strand at 975.871 kb on - strand at 975.871 kb on - strand at 975.871 kb on - strand at 976.045 kb on - strand at 976.045 kb on - strand at 976.058 kb on + strand at 976.214 kb on - strand, within Rv0877 at 976.315 kb on + strand, within Rv0877 at 976.316 kb on - strand, within Rv0877 at 976.369 kb on - strand, within Rv0877 at 976.369 kb on - strand, within Rv0877 at 976.603 kb on + strand, within Rv0877 at 976.603 kb on + strand, within Rv0877 at 976.603 kb on + strand, within Rv0877 at 976.604 kb on - strand, within Rv0877 at 976.621 kb on - strand, within Rv0877 at 976.621 kb on - strand, within Rv0877 at 976.621 kb on - strand, within Rv0877 at 976.621 kb on - strand, within Rv0877 at 976.621 kb on - strand, within Rv0877 at 976.703 kb on + strand, within Rv0877 at 976.703 kb on + strand, within Rv0877 at 976.704 kb on - strand, within Rv0877 at 976.704 kb on - strand, within Rv0877 at 976.704 kb on - strand, within Rv0877 at 976.704 kb on - strand, within Rv0877 at 976.704 kb on - strand, within Rv0877 at 976.751 kb on - strand, within Rv0877 at 976.807 kb on + strand at 976.808 kb on - strand at 976.816 kb on + strand at 976.817 kb on - strand at 976.817 kb on - strand at 976.861 kb on + strand at 976.861 kb on + strand at 976.862 kb on - strand at 976.862 kb on - strand at 976.932 kb on + strand at 976.933 kb on - strand at 976.933 kb on - strand at 976.933 kb on - strand at 976.942 kb on - strand at 976.945 kb on + strand at 977.005 kb on - strand at 977.052 kb on + strand, within Rv0878c at 977.084 kb on + strand, within Rv0878c at 977.085 kb on - strand, within Rv0878c at 977.085 kb on - strand, within Rv0878c at 977.148 kb on - strand, within Rv0878c at 977.148 kb on - strand, within Rv0878c at 977.148 kb on - strand, within Rv0878c at 977.288 kb on + strand, within Rv0878c at 977.495 kb on + strand, within Rv0878c at 977.515 kb on + strand, within Rv0878c at 977.515 kb on + strand, within Rv0878c at 977.515 kb on + strand, within Rv0878c at 977.734 kb on + strand, within Rv0878c at 977.777 kb on - strand, within Rv0878c at 977.777 kb on - strand, within Rv0878c at 977.777 kb on - strand, within Rv0878c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Cumene hydroperoxide 0.05 mM remove 975,746 - Rv0876c 0.88 -0.8 975,850 - -1.1 975,850 - -0.4 975,850 - +1.0 975,850 - -1.3 975,850 - -0.3 975,871 - +2.0 975,871 - -1.0 975,871 - -0.9 976,045 - +0.7 976,045 - +0.7 976,058 + -0.8 976,214 - Rv0877 0.18 +0.4 976,315 + Rv0877 0.30 -0.4 976,316 - Rv0877 0.31 +1.6 976,369 - Rv0877 0.37 +0.6 976,369 - Rv0877 0.37 +0.5 976,603 + Rv0877 0.67 +0.8 976,603 + Rv0877 0.67 +0.4 976,603 + Rv0877 0.67 +0.9 976,604 - Rv0877 0.67 +0.1 976,621 - Rv0877 0.69 +0.6 976,621 - Rv0877 0.69 +0.5 976,621 - Rv0877 0.69 +0.6 976,621 - Rv0877 0.69 +0.8 976,621 - Rv0877 0.69 +1.0 976,703 + Rv0877 0.80 +0.6 976,703 + Rv0877 0.80 -0.0 976,704 - Rv0877 0.80 +1.1 976,704 - Rv0877 0.80 +1.6 976,704 - Rv0877 0.80 +1.3 976,704 - Rv0877 0.80 +0.7 976,704 - Rv0877 0.80 +0.8 976,751 - Rv0877 0.86 +0.0 976,807 + +0.0 976,808 - +0.1 976,816 + -0.4 976,817 - -1.0 976,817 - -0.9 976,861 + -0.3 976,861 + -0.6 976,862 - -1.2 976,862 - -1.1 976,932 + -0.7 976,933 - -1.0 976,933 - -0.8 976,933 - -0.8 976,942 - -0.2 976,945 + +0.3 977,005 - -0.8 977,052 + Rv0878c 0.14 -0.3 977,084 + Rv0878c 0.16 -0.3 977,085 - Rv0878c 0.16 +0.2 977,085 - Rv0878c 0.16 +0.4 977,148 - Rv0878c 0.21 -0.4 977,148 - Rv0878c 0.21 -1.2 977,148 - Rv0878c 0.21 +0.1 977,288 + Rv0878c 0.31 -1.0 977,495 + Rv0878c 0.47 -1.3 977,515 + Rv0878c 0.48 -0.4 977,515 + Rv0878c 0.48 -0.2 977,515 + Rv0878c 0.48 -0.5 977,734 + Rv0878c 0.65 -0.7 977,777 - Rv0878c 0.68 +0.2 977,777 - Rv0878c 0.68 +2.0 977,777 - Rv0878c 0.68 -0.9
Or see this region's nucleotide sequence