Experiment: 7H9 with Cumene hydroperoxide 0.05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0686 and Rv0687 are separated by 152 nucleotides Rv0687 and Rv0688 are separated by 13 nucleotides
Rv0686: Rv0686 - Probable membrane protein, at 786,149 to 786,946
Rv0686
Rv0687: Rv0687 - Probable short-chain type dehydrogenase/reductase, at 787,099 to 787,926
Rv0687
Rv0688: Rv0688 - Putative ferredoxin reductase, at 787,940 to 789,160
Rv0688
Position (kb) 787
788 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 786.108 kb on + strand at 786.109 kb on - strand at 786.153 kb on + strand at 786.178 kb on - strand at 786.227 kb on + strand at 786.269 kb on + strand, within Rv0686 at 786.270 kb on - strand, within Rv0686 at 786.270 kb on - strand, within Rv0686 at 786.270 kb on - strand, within Rv0686 at 786.287 kb on - strand, within Rv0686 at 786.326 kb on + strand, within Rv0686 at 786.326 kb on + strand, within Rv0686 at 786.327 kb on - strand, within Rv0686 at 786.553 kb on - strand, within Rv0686 at 787.047 kb on - strand at 787.070 kb on + strand at 787.070 kb on + strand at 787.071 kb on - strand at 787.096 kb on + strand at 787.096 kb on + strand at 787.097 kb on - strand at 787.097 kb on - strand at 787.097 kb on - strand at 787.097 kb on - strand at 787.236 kb on - strand, within Rv0687 at 787.252 kb on + strand, within Rv0687 at 787.616 kb on - strand, within Rv0687 at 787.641 kb on - strand, within Rv0687 at 787.685 kb on + strand, within Rv0687 at 787.709 kb on - strand, within Rv0687 at 787.783 kb on - strand, within Rv0687 at 787.906 kb on - strand at 787.939 kb on + strand at 787.940 kb on - strand at 788.174 kb on + strand, within Rv0688 at 788.273 kb on + strand, within Rv0688 at 788.605 kb on - strand, within Rv0688 at 788.605 kb on - strand, within Rv0688
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Cumene hydroperoxide 0.05 mM remove 786,108 + -0.3 786,109 - +2.0 786,153 + -0.2 786,178 - -0.9 786,227 + -0.3 786,269 + Rv0686 0.15 -1.0 786,270 - Rv0686 0.15 -0.1 786,270 - Rv0686 0.15 +0.4 786,270 - Rv0686 0.15 -0.5 786,287 - Rv0686 0.17 -0.0 786,326 + Rv0686 0.22 +0.6 786,326 + Rv0686 0.22 -1.2 786,327 - Rv0686 0.22 +1.0 786,553 - Rv0686 0.51 +0.9 787,047 - -0.7 787,070 + -1.4 787,070 + +0.0 787,071 - -0.3 787,096 + -1.0 787,096 + -1.4 787,097 - -1.1 787,097 - +0.7 787,097 - +0.9 787,097 - -1.6 787,236 - Rv0687 0.17 +0.7 787,252 + Rv0687 0.18 -1.3 787,616 - Rv0687 0.62 -3.7 787,641 - Rv0687 0.65 +0.4 787,685 + Rv0687 0.71 -0.5 787,709 - Rv0687 0.74 +1.0 787,783 - Rv0687 0.83 +0.5 787,906 - +0.8 787,939 + +0.0 787,940 - -0.3 788,174 + Rv0688 0.19 +1.0 788,273 + Rv0688 0.27 -0.0 788,605 - Rv0688 0.54 +0.2 788,605 - Rv0688 0.54 -0.4
Or see this region's nucleotide sequence