Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0636

Experiment: 7H9 with Cumene hydroperoxide 0.05 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF660 and GFF661 are separated by 36 nucleotidesGFF661 and Rv0634B are separated by 35 nucleotidesRv0634B and Rv0635 are separated by 50 nucleotidesRv0635 and Rv0636 overlap by 14 nucleotidesRv0636 and Rv0637 are separated by 3 nucleotidesRv0637 and GFF666 are separated by 198 nucleotidesGFF666 and Rv0638 are separated by 140 nucleotides GFF660 - tRNA-Thr, at 731,494 to 731,566 GFF660 GFF661 - tRNA-Met, at 731,603 to 731,676 GFF661 Rv0634B: Rv0634B - 50S ribosomal protein L33 RpmG2, at 731,712 to 731,879 Rv0634B Rv0635: Rv0635 - (3R)-hydroxyacyl-ACP dehydratase subunit HadA, at 731,930 to 732,406 Rv0635 Rv0636: Rv0636 - (3R)-hydroxyacyl-ACP dehydratase subunit HadB, at 732,393 to 732,821 Rv0636 Rv0637: Rv0637 - (3R)-hydroxyacyl-ACP dehydratase subunit HadC, at 732,825 to 733,325 Rv0637 GFF666 - tRNA-Trp, at 733,524 to 733,596 GFF666 Rv0638: Rv0638 - Probable preprotein translocase SecE1, at 733,737 to 734,222 Rv0638 Position (kb) 732 733Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 731.394 kb on + strandat 731.394 kb on + strandat 731.912 kb on + strandat 731.912 kb on + strandat 731.916 kb on + strandat 731.916 kb on + strandat 733.324 kb on - strandat 733.327 kb on + strandat 733.328 kb on - strandat 733.352 kb on - strandat 733.652 kb on + strandat 733.652 kb on + strandat 733.652 kb on + strandat 733.652 kb on + strandat 733.652 kb on + strandat 733.652 kb on + strandat 733.652 kb on + strandat 733.652 kb on + strandat 733.656 kb on + strandat 733.656 kb on + strandat 733.656 kb on + strandat 733.656 kb on + strandat 733.656 kb on + strandat 733.656 kb on + strandat 733.656 kb on + strandat 733.656 kb on + strandat 733.656 kb on + strandat 733.716 kb on + strandat 733.716 kb on + strandat 733.716 kb on + strandat 733.719 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 7H9 with Cumene hydroperoxide 0.05 mM
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731,394 + -1.1
731,394 + -0.2
731,912 + -0.1
731,912 + +0.0
731,916 + -0.4
731,916 + -0.7
733,324 - -0.3
733,327 + -1.1
733,328 - -1.1
733,352 - +2.2
733,652 + -1.0
733,652 + -0.1
733,652 + -0.8
733,652 + +0.7
733,652 + +0.7
733,652 + +0.0
733,652 + -0.3
733,652 + -0.0
733,656 + -0.7
733,656 + +1.0
733,656 + -0.6
733,656 + +0.2
733,656 + +0.4
733,656 + -0.4
733,656 + -3.3
733,656 + +0.2
733,656 + +0.6
733,716 + -0.6
733,716 + -0.1
733,716 + -0.7
733,719 + -0.3

Or see this region's nucleotide sequence