Experiment: 7H9 with Cumene hydroperoxide 0.05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0624 and Rv0625c are separated by 93 nucleotides Rv0625c and Rv0626 are separated by 131 nucleotides Rv0626 and Rv0627 overlap by 4 nucleotides Rv0627 and Rv0628c are separated by 71 nucleotides
Rv0624: Rv0624 - Possible toxin VapC30. Contains PIN domain., at 716,664 to 717,059
Rv0624
Rv0625c: Rv0625c - Probable conserved transmembrane protein, at 717,153 to 717,893
Rv0625c
Rv0626: Rv0626 - Possible antitoxin VapB5, at 718,025 to 718,285
Rv0626
Rv0627: Rv0627 - Possible toxin VapC5, at 718,282 to 718,689
Rv0627
Rv0628c: Rv0628c - Conserved hypothetical protein, at 718,761 to 719,912
Rv0628c
Position (kb) 718
719 Strain fitness (log2 ratio) -2
-1
0
1 at 717.057 kb on + strand at 717.058 kb on - strand at 717.058 kb on - strand at 717.064 kb on + strand at 717.428 kb on - strand, within Rv0625c at 717.428 kb on - strand, within Rv0625c at 717.718 kb on + strand, within Rv0625c at 717.719 kb on - strand, within Rv0625c at 717.719 kb on - strand, within Rv0625c at 717.802 kb on + strand, within Rv0625c at 717.803 kb on - strand, within Rv0625c at 717.803 kb on - strand, within Rv0625c at 717.813 kb on + strand, within Rv0625c at 717.813 kb on + strand, within Rv0625c at 718.001 kb on + strand at 718.020 kb on + strand at 718.054 kb on + strand, within Rv0626
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Cumene hydroperoxide 0.05 mM remove 717,057 + -1.4 717,058 - +1.4 717,058 - -0.2 717,064 + -2.1 717,428 - Rv0625c 0.37 -0.1 717,428 - Rv0625c 0.37 -0.1 717,718 + Rv0625c 0.76 -0.6 717,719 - Rv0625c 0.76 -0.8 717,719 - Rv0625c 0.76 -0.7 717,802 + Rv0625c 0.88 -0.5 717,803 - Rv0625c 0.88 -1.2 717,803 - Rv0625c 0.88 +0.1 717,813 + Rv0625c 0.89 -0.5 717,813 + Rv0625c 0.89 -0.1 718,001 + +0.3 718,020 + -0.5 718,054 + Rv0626 0.11 -2.0
Or see this region's nucleotide sequence