Experiment: 7H9 with Sutezolid 0.12 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0323c and Rv0324 are separated by 100 nucleotides Rv0324 and Rv0325 are separated by 6 nucleotides Rv0325 and Rv0326 are separated by 9 nucleotides Rv0326 and Rv0327c overlap by 33 nucleotides
Rv0323c: Rv0323c - Conserved hypothetical protein, at 390,580 to 391,251
Rv0323c
Rv0324: Rv0324 - Possible transcriptional regulatory protein (possibly ArsR-family), at 391,352 to 392,032
Rv0324
Rv0325: Rv0325 - Hypothetical protein, at 392,039 to 392,263
Rv0325
Rv0326: Rv0326 - Hypothetical protein, at 392,273 to 392,728
Rv0326
Rv0327c: Rv0327c - Possible cytochrome P450 135A1 Cyp135A1, at 392,696 to 394,045
Rv0327c
Position (kb) 392
393 Strain fitness (log2 ratio) -2
-1
0
1 at 391.303 kb on + strand at 391.584 kb on - strand, within Rv0324 at 391.795 kb on + strand, within Rv0324 at 391.796 kb on - strand, within Rv0324 at 391.877 kb on + strand, within Rv0324 at 391.892 kb on + strand, within Rv0324 at 392.058 kb on + strand at 392.059 kb on - strand at 392.059 kb on - strand at 392.141 kb on + strand, within Rv0325 at 392.141 kb on + strand, within Rv0325 at 392.169 kb on + strand, within Rv0325 at 392.169 kb on + strand, within Rv0325 at 392.170 kb on - strand, within Rv0325 at 392.170 kb on - strand, within Rv0325 at 392.170 kb on - strand, within Rv0325 at 392.170 kb on - strand, within Rv0325 at 392.171 kb on + strand, within Rv0325 at 392.172 kb on - strand, within Rv0325 at 392.172 kb on - strand, within Rv0325 at 392.172 kb on - strand, within Rv0325 at 392.172 kb on - strand, within Rv0325 at 392.250 kb on - strand at 393.182 kb on + strand, within Rv0327c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Sutezolid 0.12 ug/mL remove 391,303 + -2.3 391,584 - Rv0324 0.34 +1.0 391,795 + Rv0324 0.65 -0.4 391,796 - Rv0324 0.65 +0.0 391,877 + Rv0324 0.77 -1.7 391,892 + Rv0324 0.79 +0.2 392,058 + +0.4 392,059 - +0.2 392,059 - +1.3 392,141 + Rv0325 0.45 +0.2 392,141 + Rv0325 0.45 -0.1 392,169 + Rv0325 0.58 -0.0 392,169 + Rv0325 0.58 +0.4 392,170 - Rv0325 0.58 -0.8 392,170 - Rv0325 0.58 -0.3 392,170 - Rv0325 0.58 +0.8 392,170 - Rv0325 0.58 +0.5 392,171 + Rv0325 0.59 +1.7 392,172 - Rv0325 0.59 -0.1 392,172 - Rv0325 0.59 -0.4 392,172 - Rv0325 0.59 -0.4 392,172 - Rv0325 0.59 +1.4 392,250 - -0.6 393,182 + Rv0327c 0.36 +0.1
Or see this region's nucleotide sequence