Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3439c

Experiment: 7H9 with Amikacin di2 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Amikacin di2 ug/mL
3,857,578	+		Rv3438	0.21	+0.3
3,857,578	+		Rv3438	0.21	-1.5
3,857,882	-		Rv3438	0.58	-1.6
3,858,132	+		Rv3438	0.87	+0.1
3,858,133	-		Rv3438	0.87	+0.3
3,858,133	-		Rv3438	0.87	+1.9
3,859,037	+		Rv3439c	0.55	-0.6
3,859,037	+		Rv3439c	0.55	+0.5
3,859,038	-		Rv3439c	0.55	+0.6
3,859,038	-		Rv3439c	0.55	+1.3
3,859,109	+		Rv3439c	0.61	+0.4
3,859,109	+		Rv3439c	0.61	-0.4
3,859,117	+		Rv3439c	0.61	-0.5
3,859,117	+		Rv3439c	0.61	+0.3
3,859,118	-		Rv3439c	0.61	-0.7
3,859,417	-		Rv3439c	0.82	-0.5
3,859,417	-		Rv3439c	0.82	+0.2
3,859,592	+				+0.7
3,859,789	-		Rv3440c	0.40	+2.9
3,859,927	+		Rv3440c	0.84	+0.2
3,859,928	-		Rv3440c	0.84	-0.4
3,859,938	+		Rv3440c	0.88	+0.0
3,859,938	+		Rv3440c	0.88	-1.9
3,859,938	+		Rv3440c	0.88	-0.4
3,859,939	-		Rv3440c	0.88	-0.1
3,859,939	-		Rv3440c	0.88	-0.0
3,859,939	-		Rv3440c	0.88	-0.5
3,859,939	-		Rv3440c	0.88	+2.5
3,859,939	-		Rv3440c	0.88	-0.4
3,859,939	-		Rv3440c	0.88	-0.0
3,859,939	-		Rv3440c	0.88	-0.3
3,859,939	-		Rv3440c	0.88	-0.9
3,859,945	-				-0.3
3,859,945	-				-0.5
3,859,945	-				+0.3
3,859,959	+				-1.2
3,859,959	+				+0.6