Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2426c

Experiment: 7H9 with Amikacin di2 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Amikacin di2 ug/mL
2,722,317	-		Rv2425c	0.31	-2.2
2,722,317	-		Rv2425c	0.31	+1.9
2,722,621	-		Rv2425c	0.52	+0.1
2,722,864	-		Rv2425c	0.69	-0.5
2,722,864	-		Rv2425c	0.69	+0.7
2,722,872	+		Rv2425c	0.70	+0.1
2,722,969	+		Rv2425c	0.76	-0.3
2,723,083	-		Rv2425c	0.84	-0.8
2,723,087	-		Rv2425c	0.85	-1.0
2,723,294	-				-0.6
2,723,309	+				-2.2
2,723,309	+				-0.8
2,723,309	+				-0.4
2,723,469	+		Rv2426c	0.18	-2.0
2,723,469	+		Rv2426c	0.18	+1.0
2,723,506	+		Rv2426c	0.23	-0.1
2,723,507	-		Rv2426c	0.23	-0.1
2,723,507	-		Rv2426c	0.23	+0.6
2,723,597	+		Rv2426c	0.33	+0.5
2,723,907	+		Rv2426c	0.68	+0.1
2,723,925	-		Rv2426c	0.70	+0.2
2,723,925	-		Rv2426c	0.70	+0.3
2,723,925	-		Rv2426c	0.70	+1.2
2,723,954	+		Rv2426c	0.74	+0.1
2,724,218	+				+0.1
2,724,218	+				+0.4
2,724,587	+		Rv2427c	0.29	+0.9
2,724,756	+		Rv2427c	0.42	-0.1
2,724,756	+		Rv2427c	0.42	-0.1
2,724,757	-		Rv2427c	0.42	+0.1
2,724,963	-		Rv2427c	0.59	-1.1
2,725,147	+		Rv2427c	0.73	+0.6
2,725,147	+		Rv2427c	0.73	+2.1
2,725,148	-		Rv2427c	0.74	-0.2
2,725,150	-		Rv2427c	0.74	+0.0
2,725,150	-		Rv2427c	0.74	-1.1
2,725,150	-		Rv2427c	0.74	+0.3