Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2223c

Experiment: 7H9 with Amikacin di2 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Amikacin di2 ug/mL
2,492,856	+		Rv2222c	0.34	-0.1
2,493,252	-		Rv2222c	0.63	-3.0
2,493,360	+		Rv2222c	0.71	+0.4
2,493,754	+				-1.0
2,493,990	+				-1.2
2,494,003	+		Rv2223c	0.11	-0.5
2,494,149	-		Rv2223c	0.20	-0.6
2,494,149	-		Rv2223c	0.20	+0.1
2,494,149	-		Rv2223c	0.20	+0.6
2,494,291	+		Rv2223c	0.29	-0.5
2,494,291	+		Rv2223c	0.29	+2.4
2,494,292	-		Rv2223c	0.29	-0.8
2,494,292	-		Rv2223c	0.29	+0.1
2,494,292	-		Rv2223c	0.29	-0.9
2,494,384	+		Rv2223c	0.35	-0.3
2,494,385	-		Rv2223c	0.35	+0.2
2,494,420	+		Rv2223c	0.37	-0.1
2,494,420	+		Rv2223c	0.37	-0.7
2,494,421	-		Rv2223c	0.37	-1.9
2,494,487	-		Rv2223c	0.42	-0.9
2,494,555	+		Rv2223c	0.46	-0.1
2,494,555	+		Rv2223c	0.46	+0.4
2,494,556	-		Rv2223c	0.46	-0.1
2,494,629	-		Rv2223c	0.51	-0.6
2,494,662	-		Rv2223c	0.53	-1.1
2,494,703	-		Rv2223c	0.55	-0.0
2,494,703	-		Rv2223c	0.55	-0.0
2,494,703	-		Rv2223c	0.55	-0.1
2,494,717	+		Rv2223c	0.56	-0.5
2,494,717	+		Rv2223c	0.56	+0.0
2,494,717	+		Rv2223c	0.56	+0.9
2,495,028	-		Rv2223c	0.76	-0.1
2,495,155	+		Rv2223c	0.84	-0.1
2,495,156	-		Rv2223c	0.84	-0.3
2,495,322	+				-0.5
2,495,415	+				-0.0
2,495,415	+				+0.1
2,495,416	-				-1.8
2,495,504	+				+1.1
2,495,545	+				+0.6
2,495,545	+				+1.2
2,495,546	-				-0.6
2,495,546	-				+0.1
2,495,621	+		Rv2224c	0.10	-0.2
2,495,622	-		Rv2224c	0.10	+0.9
2,495,622	-		Rv2224c	0.10	-0.6
2,495,622	-		Rv2224c	0.10	-0.9
2,495,762	+		Rv2224c	0.19	-0.7
2,495,763	-		Rv2224c	0.19	-0.4
2,495,909	+		Rv2224c	0.29	-0.4
2,495,909	+		Rv2224c	0.29	-0.4
2,495,909	+		Rv2224c	0.29	-0.6
2,495,909	+		Rv2224c	0.29	-1.5
2,495,909	+		Rv2224c	0.29	+0.4
2,495,909	+		Rv2224c	0.29	-1.8
2,495,910	-		Rv2224c	0.29	-0.9
2,495,910	-		Rv2224c	0.29	-0.3
2,495,910	-		Rv2224c	0.29	+0.8
2,495,910	-		Rv2224c	0.29	-0.1
2,495,999	+		Rv2224c	0.34	-0.6
2,496,000	-		Rv2224c	0.34	+0.9
2,496,010	-		Rv2224c	0.35	+0.1
2,496,033	+		Rv2224c	0.37	+0.6
2,496,033	+		Rv2224c	0.37	-0.0
2,496,034	-		Rv2224c	0.37	-0.3
2,496,035	+		Rv2224c	0.37	-0.9
2,496,036	-		Rv2224c	0.37	-1.1
2,496,123	-		Rv2224c	0.42	-2.2
2,496,191	+		Rv2224c	0.47	-0.2
2,496,192	-		Rv2224c	0.47	-0.8
2,496,192	-		Rv2224c	0.47	-0.9
2,496,192	-		Rv2224c	0.47	+0.8
2,496,192	-		Rv2224c	0.47	-0.1
2,496,315	-		Rv2224c	0.55	-1.0
2,496,315	-		Rv2224c	0.55	+2.4
2,496,339	-		Rv2224c	0.56	+0.0
2,496,345	-		Rv2224c	0.57	+0.3
2,496,345	-		Rv2224c	0.57	-0.2
2,496,353	+		Rv2224c	0.57	-1.3