Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1729c

Experiment: 7H9 with Amikacin di2 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Amikacin di2 ug/mL
1,953,656	-		Rv1727	0.68	-0.3
1,953,779	-		Rv1727	0.89	+0.2
1,953,879	-				-0.1
1,953,898	+				-0.4
1,953,899	-				+0.8
1,954,018	+		Rv1728c	0.20	+0.3
1,954,430	+		Rv1728c	0.73	-0.3
1,954,430	+		Rv1728c	0.73	+0.3
1,954,431	-		Rv1728c	0.74	-0.4
1,954,431	-		Rv1728c	0.74	+0.2
1,954,451	-		Rv1728c	0.76	-0.8
1,954,878	-		Rv1729c	0.26	-0.8
1,955,005	-		Rv1729c	0.40	-1.5
1,955,005	-		Rv1729c	0.40	-2.2
1,955,006	+		Rv1729c	0.40	+0.4
1,955,006	+		Rv1729c	0.40	+0.2
1,955,531	-				-0.1
1,955,693	+				+0.1
1,956,333	+		Rv1730c	0.41	+0.3