Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0937c

Experiment: 7H9 with Amikacin di2 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Amikacin di2 ug/mL
1,044,246	+				+3.3
1,044,247	-				+0.5
1,044,351	+				+0.1
1,044,386	+				-0.4
1,044,386	+				-0.2
1,044,752	+		Rv0936	0.48	+0.6
1,044,753	-		Rv0936	0.48	-0.6
1,044,815	+		Rv0936	0.55	-0.2
1,044,816	-		Rv0936	0.55	-0.2
1,045,656	+		Rv0937c	0.56	+0.6
1,045,830	+		Rv0937c	0.77	+0.6
1,046,022	+				+0.6
1,046,022	+				-0.4
1,046,023	-				+0.1
1,046,023	-				+0.9
1,046,030	+				+2.9
1,046,030	+				-1.2
1,046,030	+				+2.9
1,046,124	+				-0.5
1,046,124	+				-0.5
1,046,125	-				+0.1
1,046,191	-				-0.6
1,046,233	-				-1.1
1,046,233	-				+0.8
1,046,233	-				-0.9
1,046,233	-				-0.1
1,046,863	+		Rv0938	0.32	-0.3