Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0909

Experiment: 7H9 with Amikacin di2 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Amikacin di2 ug/mL
1,013,757	+		Rv0908	0.85	-0.1
1,013,758	-		Rv0908	0.85	+2.5
1,013,787	-		Rv0908	0.86	+0.3
1,013,787	-		Rv0908	0.86	+0.3
1,013,798	+		Rv0908	0.86	-0.4
1,013,878	-		Rv0908	0.90	-0.1
1,013,951	+				-1.1
1,013,952	-				-0.2
1,014,143	+				-1.1
1,014,253	-				-0.6
1,014,253	-				+0.0
1,014,405	+				+0.5
1,014,406	-				-1.2
1,014,406	-				-1.7
1,014,554	-				+0.2
1,014,630	-				+2.3
1,014,630	-				-0.5
1,014,646	+				-0.7
1,014,676	+				-0.2
1,014,700	+		Rv0909	0.11	+0.3
1,014,790	-		Rv0909	0.61	+0.3
1,015,404	-				+1.0
1,015,409	+				-0.1
1,015,412	+				+1.5
1,015,482	+		Rv0911	0.11	+0.6
1,015,528	-		Rv0911	0.17	-0.7
1,015,537	-		Rv0911	0.18	+0.9
1,015,623	+		Rv0911	0.29	+0.2
1,015,623	+		Rv0911	0.29	-0.4
1,015,623	+		Rv0911	0.29	-0.4
1,015,706	-		Rv0911	0.40	-0.4