Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0906

Experiment: 7H9 with Amikacin di2 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Amikacin di2 ug/mL
1,008,004	+		Rv0904c	0.88	-0.1
1,008,077	+				-0.5
1,008,111	+				-0.4
1,008,140	-				+0.9
1,008,140	-				+0.1
1,008,194	-				+0.9
1,008,194	-				-0.1
1,008,194	-				+0.1
1,008,195	+				-0.6
1,008,196	-				-0.0
1,008,196	-				-0.7
1,008,277	+				-0.1
1,008,302	+		Rv0905	0.13	-0.4
1,008,303	-		Rv0905	0.13	-0.7
1,008,418	-		Rv0905	0.29	+1.9
1,009,173	+		Rv0906	0.20	-0.3
1,009,318	+		Rv0906	0.33	-1.2
1,009,445	+		Rv0906	0.45	-0.3
1,009,803	-		Rv0906	0.77	-0.7
1,009,803	-		Rv0906	0.77	-0.6
1,010,061	-				+0.0
1,010,355	-		Rv0907	0.14	+0.4
1,010,623	+		Rv0907	0.30	-0.1
1,010,761	-		Rv0907	0.39	-0.1
1,010,853	+		Rv0907	0.45	+0.6
1,010,877	-		Rv0907	0.46	+0.0
1,011,015	-		Rv0907	0.55	+0.3
1,011,015	-		Rv0907	0.55	-0.1
1,011,060	+		Rv0907	0.58	+0.4