Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0897c

Experiment: 7H9 with Amikacin di2 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Amikacin di2 ug/mL
1,000,807	-				+0.5
1,000,807	-				+0.1
1,000,807	-				-0.4
1,000,940	+				-0.9
1,000,941	-				-1.4
1,002,021	+		Rv0897c	0.75	+0.4
1,002,021	+		Rv0897c	0.75	+1.6
1,002,021	+		Rv0897c	0.75	+1.9
1,002,022	-		Rv0897c	0.75	+0.2
1,002,145	-		Rv0897c	0.83	-0.7
1,002,145	-		Rv0897c	0.83	+0.4
1,002,226	-		Rv0897c	0.88	+1.2
1,002,342	+				-0.2
1,002,343	-				+0.1
1,002,343	-				-0.6
1,002,443	-				-0.5
1,002,443	-				-0.8
1,002,452	-				+0.1
1,002,811	-				+0.3
1,002,820	+				-0.1
1,002,820	+				+0.6
1,002,922	+		Rv0899	0.11	+2.5