Experiment: 7H9 with Amikacin di2 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0483 and Rv0484c overlap by 20 nucleotides Rv0484c and Rv0485 are separated by 182 nucleotides
Rv0483: Rv0483 - Probable conserved lipoprotein LprQ, at 571,710 to 573,065
Rv0483
Rv0484c: Rv0484c - Probable short-chain type oxidoreductase, at 573,046 to 573,801
Rv0484c
Rv0485: Rv0485 - Possible transcriptional regulatory protein, at 573,984 to 575,300
Rv0485
Position (kb) 573
574 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 572.059 kb on - strand, within Rv0483 at 572.059 kb on - strand, within Rv0483 at 572.059 kb on - strand, within Rv0483 at 572.094 kb on + strand, within Rv0483 at 572.094 kb on + strand, within Rv0483 at 572.094 kb on + strand, within Rv0483 at 572.094 kb on + strand, within Rv0483 at 572.095 kb on - strand, within Rv0483 at 572.290 kb on + strand, within Rv0483 at 572.291 kb on - strand, within Rv0483 at 572.382 kb on + strand, within Rv0483 at 572.386 kb on - strand, within Rv0483 at 572.424 kb on + strand, within Rv0483 at 572.424 kb on + strand, within Rv0483 at 572.425 kb on - strand, within Rv0483 at 572.425 kb on - strand, within Rv0483 at 572.451 kb on + strand, within Rv0483 at 572.465 kb on + strand, within Rv0483 at 572.465 kb on + strand, within Rv0483 at 572.466 kb on - strand, within Rv0483 at 572.466 kb on - strand, within Rv0483 at 572.466 kb on - strand, within Rv0483 at 572.577 kb on + strand, within Rv0483 at 572.652 kb on + strand, within Rv0483 at 572.652 kb on + strand, within Rv0483 at 572.652 kb on + strand, within Rv0483 at 572.652 kb on + strand, within Rv0483 at 572.652 kb on + strand, within Rv0483 at 572.652 kb on + strand, within Rv0483 at 572.652 kb on + strand, within Rv0483 at 572.653 kb on - strand, within Rv0483 at 572.653 kb on - strand, within Rv0483 at 572.653 kb on - strand, within Rv0483 at 572.653 kb on - strand, within Rv0483 at 572.653 kb on - strand, within Rv0483 at 572.676 kb on + strand, within Rv0483 at 572.684 kb on + strand, within Rv0483 at 572.744 kb on + strand, within Rv0483 at 572.745 kb on - strand, within Rv0483 at 572.745 kb on - strand, within Rv0483 at 572.789 kb on + strand, within Rv0483 at 572.790 kb on - strand, within Rv0483 at 572.790 kb on - strand, within Rv0483 at 572.820 kb on + strand, within Rv0483 at 572.820 kb on + strand, within Rv0483 at 572.821 kb on - strand, within Rv0483 at 572.823 kb on + strand, within Rv0483 at 572.823 kb on + strand, within Rv0483 at 572.823 kb on + strand, within Rv0483 at 572.839 kb on - strand, within Rv0483 at 572.884 kb on - strand, within Rv0483 at 573.044 kb on + strand at 573.044 kb on + strand at 573.044 kb on + strand at 573.045 kb on - strand at 573.045 kb on - strand at 573.045 kb on - strand at 573.045 kb on - strand at 573.045 kb on - strand at 573.176 kb on - strand, within Rv0484c at 573.179 kb on - strand, within Rv0484c at 573.179 kb on - strand, within Rv0484c at 573.198 kb on - strand, within Rv0484c at 573.374 kb on + strand, within Rv0484c at 573.475 kb on + strand, within Rv0484c at 573.475 kb on + strand, within Rv0484c at 573.814 kb on - strand at 573.816 kb on + strand at 573.817 kb on - strand at 573.826 kb on - strand at 573.826 kb on - strand at 573.826 kb on - strand at 573.840 kb on + strand at 573.841 kb on - strand at 573.841 kb on - strand at 573.925 kb on + strand at 573.988 kb on - strand at 574.059 kb on + strand at 574.060 kb on - strand at 574.060 kb on - strand at 574.150 kb on + strand, within Rv0485 at 574.150 kb on + strand, within Rv0485 at 574.151 kb on - strand, within Rv0485 at 574.151 kb on - strand, within Rv0485 at 574.289 kb on - strand, within Rv0485 at 574.289 kb on - strand, within Rv0485 at 574.404 kb on - strand, within Rv0485 at 574.452 kb on + strand, within Rv0485 at 574.594 kb on + strand, within Rv0485 at 574.595 kb on - strand, within Rv0485 at 574.702 kb on - strand, within Rv0485 at 574.717 kb on + strand, within Rv0485 at 574.723 kb on - strand, within Rv0485
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Amikacin di2 ug/mL remove 572,059 - Rv0483 0.26 -0.7 572,059 - Rv0483 0.26 +0.9 572,059 - Rv0483 0.26 -0.3 572,094 + Rv0483 0.28 -0.1 572,094 + Rv0483 0.28 -0.3 572,094 + Rv0483 0.28 +0.2 572,094 + Rv0483 0.28 +0.3 572,095 - Rv0483 0.28 +0.7 572,290 + Rv0483 0.43 +2.5 572,291 - Rv0483 0.43 +1.1 572,382 + Rv0483 0.50 +0.2 572,386 - Rv0483 0.50 -0.1 572,424 + Rv0483 0.53 +1.9 572,424 + Rv0483 0.53 +0.4 572,425 - Rv0483 0.53 -1.5 572,425 - Rv0483 0.53 +1.9 572,451 + Rv0483 0.55 -0.7 572,465 + Rv0483 0.56 +0.4 572,465 + Rv0483 0.56 +0.0 572,466 - Rv0483 0.56 -0.3 572,466 - Rv0483 0.56 +0.5 572,466 - Rv0483 0.56 -0.1 572,577 + Rv0483 0.64 +1.3 572,652 + Rv0483 0.69 +0.7 572,652 + Rv0483 0.69 +4.3 572,652 + Rv0483 0.69 +1.9 572,652 + Rv0483 0.69 +0.5 572,652 + Rv0483 0.69 -0.4 572,652 + Rv0483 0.69 -0.3 572,652 + Rv0483 0.69 -0.4 572,653 - Rv0483 0.70 +0.3 572,653 - Rv0483 0.70 -0.4 572,653 - Rv0483 0.70 +0.1 572,653 - Rv0483 0.70 -0.3 572,653 - Rv0483 0.70 +0.8 572,676 + Rv0483 0.71 -0.5 572,684 + Rv0483 0.72 +0.3 572,744 + Rv0483 0.76 +0.1 572,745 - Rv0483 0.76 +0.9 572,745 - Rv0483 0.76 -0.6 572,789 + Rv0483 0.80 -0.5 572,790 - Rv0483 0.80 +0.0 572,790 - Rv0483 0.80 -1.9 572,820 + Rv0483 0.82 -1.3 572,820 + Rv0483 0.82 +0.1 572,821 - Rv0483 0.82 -0.1 572,823 + Rv0483 0.82 +0.7 572,823 + Rv0483 0.82 +0.1 572,823 + Rv0483 0.82 +0.5 572,839 - Rv0483 0.83 +0.3 572,884 - Rv0483 0.87 +2.9 573,044 + -0.7 573,044 + -0.9 573,044 + +0.8 573,045 - +0.1 573,045 - +1.2 573,045 - +0.6 573,045 - -0.1 573,045 - +0.9 573,176 - Rv0484c 0.17 +0.2 573,179 - Rv0484c 0.18 -0.3 573,179 - Rv0484c 0.18 +0.5 573,198 - Rv0484c 0.20 +0.3 573,374 + Rv0484c 0.43 +1.8 573,475 + Rv0484c 0.57 +0.7 573,475 + Rv0484c 0.57 -0.1 573,814 - +1.2 573,816 + -0.3 573,817 - -0.5 573,826 - +0.6 573,826 - +1.3 573,826 - -0.7 573,840 + +0.1 573,841 - -0.6 573,841 - +0.3 573,925 + +1.9 573,988 - -0.1 574,059 + -0.4 574,060 - +1.3 574,060 - +0.0 574,150 + Rv0485 0.13 -0.2 574,150 + Rv0485 0.13 -0.2 574,151 - Rv0485 0.13 -0.1 574,151 - Rv0485 0.13 +0.2 574,289 - Rv0485 0.23 +0.9 574,289 - Rv0485 0.23 -0.4 574,404 - Rv0485 0.32 -0.0 574,452 + Rv0485 0.36 +0.0 574,594 + Rv0485 0.46 -0.7 574,595 - Rv0485 0.46 -0.6 574,702 - Rv0485 0.55 +0.5 574,717 + Rv0485 0.56 -0.2 574,723 - Rv0485 0.56 -0.4
Or see this region's nucleotide sequence