Experiment: 7H9 with Amikacin di2 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv3624c and Rv3625c overlap by 4 nucleotides Rv3625c and Rv3626c overlap by 22 nucleotides Rv3626c and Rv3627c overlap by 4 nucleotides
Rv3624c: Rv3624c - Hypoxanthine-guanine phosphoribosyltransferase Hpt (HGPRT) (HGPRTase) (hypoxanthine phosphoribosyltransferase) (imp pyrophosphorylase) (imp diphosphorylase) (transphosphoribosyltransferase) (guanine phosphoribosyltransferase), at 4,063,254 to 4,063,904
Rv3624c
Rv3625c: Rv3625c - Possible cell cycle protein MesJ, at 4,063,901 to 4,064,872
Rv3625c
Rv3626c: Rv3626c - Conserved hypothetical protein, at 4,064,851 to 4,065,903
Rv3626c
Rv3627c: Rv3627c - Conserved protein, at 4,065,900 to 4,067,285
Rv3627c
Position (kb) 4064
4065
4066 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4065.185 kb on - strand, within Rv3626c at 4065.193 kb on - strand, within Rv3626c at 4065.366 kb on - strand, within Rv3626c at 4065.489 kb on - strand, within Rv3626c at 4065.534 kb on - strand, within Rv3626c at 4065.534 kb on - strand, within Rv3626c at 4065.534 kb on - strand, within Rv3626c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Amikacin di2 ug/mL remove 4,065,185 - Rv3626c 0.32 -3.0 4,065,193 - Rv3626c 0.32 -0.2 4,065,366 - Rv3626c 0.49 -0.2 4,065,489 - Rv3626c 0.61 -1.0 4,065,534 - Rv3626c 0.65 -1.4 4,065,534 - Rv3626c 0.65 -0.2 4,065,534 - Rv3626c 0.65 -0.6
Or see this region's nucleotide sequence