Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3619c

Experiment: 7H9 with Amikacin di2 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Amikacin di2 ug/mL
4,059,052	+		Rv3618	0.30	-0.0
4,059,052	+		Rv3618	0.30	+0.0
4,059,053	-		Rv3618	0.30	-0.1
4,059,205	+		Rv3618	0.43	+0.5
4,059,205	+		Rv3618	0.43	-0.1
4,059,323	-		Rv3618	0.53	-0.3
4,059,491	-		Rv3618	0.67	+0.4
4,059,569	-		Rv3618	0.73	-0.3
4,059,712	+		Rv3618	0.85	+0.8
4,059,712	+		Rv3618	0.85	+0.7
4,059,713	-		Rv3618	0.85	+0.7
4,059,713	-		Rv3618	0.85	+0.5
4,059,742	+		Rv3618	0.88	-0.9
4,059,790	-				+0.5
4,059,923	-				-0.5
4,059,923	-				-0.3
4,059,973	+				-0.5
4,059,974	-				-2.3
4,059,974	-				+0.0
4,060,591	+				+0.4
4,060,641	+				-0.1
4,060,641	+				-0.9
4,060,642	-				-0.5
4,060,716	+				-1.0
4,061,031	-		Rv3621c	0.31	+1.7
4,061,031	-		Rv3621c	0.31	+0.4