Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3543c

Experiment: 7H9 with Amikacin di2 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Amikacin di2 ug/mL
3,981,094	+				+0.5
3,981,113	+				-0.4
3,981,165	+		Rv3542c	0.13	+2.4
3,981,280	+		Rv3542c	0.25	-0.3
3,981,429	-		Rv3542c	0.41	-1.9
3,981,649	+		Rv3542c	0.65	-0.3
3,982,134	+		Rv3543c	0.13	-0.2
3,982,377	+		Rv3543c	0.34	-0.5
3,982,378	-		Rv3543c	0.34	-0.9
3,982,506	+		Rv3543c	0.45	-1.9
3,983,019	+		Rv3543c	0.90	-0.7
3,983,211	-				+0.6
3,983,214	-				+1.0
3,983,403	-		Rv3544c	0.27	-0.9
3,983,403	-		Rv3544c	0.27	-0.9
3,983,477	+		Rv3544c	0.35	-2.7
3,983,523	-		Rv3544c	0.39	+0.8
3,983,523	-		Rv3544c	0.39	-0.2
3,983,652	+		Rv3544c	0.52	-0.5
3,983,653	-		Rv3544c	0.52	-0.9
3,983,995	+		Rv3544c	0.85	-0.6