Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3176c

Experiment: 7H9 with Amikacin di2 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Amikacin di2 ug/mL
3,543,395	-		Rv3175	0.36	+0.1
3,543,635	-		Rv3175	0.52	-0.1
3,543,963	-		Rv3175	0.74	+0.2
3,544,151	-		Rv3175	0.87	-0.9
3,544,230	+				-0.4
3,544,289	+				-0.6
3,544,289	+				+0.7
3,544,290	-				-0.0
3,544,346	-				-0.1
3,544,346	-				+2.9
3,544,371	-				+0.3
3,544,927	+		Rv3176c	0.61	-1.5
3,545,017	+		Rv3176c	0.70	-0.7
3,545,054	-		Rv3176c	0.74	-2.9
3,545,063	-		Rv3176c	0.75	-0.5
3,545,119	+		Rv3176c	0.81	-0.7
3,545,119	+		Rv3176c	0.81	-1.7
3,545,181	+		Rv3176c	0.87	-0.7
3,545,181	+		Rv3176c	0.87	-0.4
3,545,181	+		Rv3176c	0.87	+1.9
3,545,392	+				-0.3
3,545,401	+				-0.4
3,545,401	+				-0.1
3,545,484	-				-0.1
3,545,534	+		Rv3177	0.10	-0.4