Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2572c

Experiment: 7H9 with Amikacin di2 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Amikacin di2 ug/mL
2,895,130	-		Rv2571c	0.22	-1.2
2,895,195	-		Rv2571c	0.28	-0.1
2,895,592	+		Rv2571c	0.65	-2.1
2,895,592	+		Rv2571c	0.65	-0.5
2,895,846	-		Rv2571c	0.89	+0.7
2,895,846	-		Rv2571c	0.89	+1.9
2,895,973	-				-1.4
2,897,837	+				+0.2
2,897,838	-				-0.5
2,898,453	+		Rv2573	0.55	+1.6
2,898,453	+		Rv2573	0.55	+0.5
2,898,453	+		Rv2573	0.55	-1.4
2,898,453	+		Rv2573	0.55	-1.0
2,898,453	+		Rv2573	0.55	-0.4
2,898,453	+		Rv2573	0.55	-0.3
2,898,454	-		Rv2573	0.55	-0.8
2,898,520	+		Rv2573	0.64	-0.2
2,898,793	+				-2.3
2,898,793	+				+0.0
2,898,793	+				-0.6
2,898,800	+				-0.9
2,898,801	-				-0.3