Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1702c

Experiment: 7H9 with Amikacin di2 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Amikacin di2 ug/mL
1,926,664	+		Rv1701	0.49	+0.4
1,926,665	-		Rv1701	0.49	+0.0
1,926,970	-		Rv1701	0.82	-0.5
1,926,970	-		Rv1701	0.82	-1.6
1,927,073	-				+0.2
1,927,135	+				-0.3
1,927,261	-				-0.4
1,927,456	-		Rv1702c	0.18	+1.5
1,927,463	+		Rv1702c	0.18	+0.1
1,927,579	+		Rv1702c	0.27	+0.1
1,927,580	-		Rv1702c	0.27	-0.5
1,927,583	+		Rv1702c	0.27	-0.3
1,927,583	+		Rv1702c	0.27	-0.5
1,927,583	+		Rv1702c	0.27	-1.5
1,927,583	+		Rv1702c	0.27	-1.3
1,927,584	-		Rv1702c	0.27	-1.0
1,927,584	-		Rv1702c	0.27	-1.1
1,927,587	+		Rv1702c	0.28	-0.4
1,927,587	+		Rv1702c	0.28	-0.9
1,928,020	-		Rv1702c	0.59	-1.2
1,928,060	+		Rv1702c	0.62	-0.7
1,928,060	+		Rv1702c	0.62	-0.9
1,928,060	+		Rv1702c	0.62	+0.1
1,928,070	-		Rv1702c	0.63	-0.4
1,928,070	-		Rv1702c	0.63	+0.0
1,928,154	-		Rv1702c	0.69	+0.1
1,928,354	+		Rv1702c	0.84	-0.6
1,928,354	+		Rv1702c	0.84	+1.3
1,928,354	+		Rv1702c	0.84	-0.8
1,928,355	-		Rv1702c	0.84	+1.9
1,928,915	+				+0.3
1,928,915	+				-0.4
1,928,916	-				-0.3
1,929,029	+				-0.6
1,929,029	+				+0.3
1,929,030	-				-0.4
1,929,030	-				-0.5
1,929,141	+				+0.0
1,929,238	+		Rv1703c	0.18	-0.2
1,929,238	+		Rv1703c	0.18	+1.5
1,929,238	+		Rv1703c	0.18	+0.5
1,929,238	+		Rv1703c	0.18	-0.2
1,929,239	-		Rv1703c	0.18	-0.1
1,929,239	-		Rv1703c	0.18	-1.1
1,929,240	+		Rv1703c	0.18	+0.3
1,929,240	+		Rv1703c	0.18	+0.3
1,929,240	+		Rv1703c	0.18	+0.3
1,929,240	+		Rv1703c	0.18	+0.8
1,929,241	-		Rv1703c	0.19	-0.6
1,929,320	+		Rv1703c	0.32	-0.3
1,929,410	+		Rv1703c	0.47	-0.8
1,929,537	+		Rv1703c	0.69	-0.3