Experiment: 7H9 with Amikacin di2 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0652 and Rv0653c overlap by 8 nucleotides Rv0653c and Rv0654 are separated by 70 nucleotides Rv0654 and Rv0655 are separated by 11 nucleotides
Rv0652: Rv0652 - 50S ribosomal protein L7/L12 RplL (SA1), at 748,849 to 749,241
Rv0652
Rv0653c: Rv0653c - Possible transcriptional regulatory protein (probably TetR-family), at 749,234 to 749,929
Rv0653c
Rv0654: Rv0654 - Probable dioxygenase, at 750,000 to 751,505
Rv0654
Rv0655: Rv0655 - Possible ribonucleotide-transport ATP-binding protein ABC transporter Mkl, at 751,517 to 752,596
Rv0655
Position (kb) 749
750
751
752 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 749.239 kb on + strand at 749.240 kb on - strand at 749.447 kb on + strand, within Rv0653c at 749.447 kb on + strand, within Rv0653c at 749.447 kb on + strand, within Rv0653c at 749.448 kb on - strand, within Rv0653c at 749.448 kb on - strand, within Rv0653c at 749.634 kb on + strand, within Rv0653c at 749.634 kb on + strand, within Rv0653c at 749.635 kb on - strand, within Rv0653c at 749.744 kb on + strand, within Rv0653c at 749.744 kb on + strand, within Rv0653c at 749.800 kb on - strand, within Rv0653c at 750.073 kb on + strand at 750.073 kb on + strand at 750.073 kb on + strand at 750.074 kb on - strand at 750.074 kb on - strand at 750.130 kb on - strand at 750.130 kb on - strand at 750.138 kb on - strand at 750.177 kb on + strand, within Rv0654 at 750.177 kb on + strand, within Rv0654 at 750.178 kb on - strand, within Rv0654 at 750.408 kb on + strand, within Rv0654 at 750.409 kb on - strand, within Rv0654 at 750.409 kb on - strand, within Rv0654 at 750.475 kb on - strand, within Rv0654 at 750.528 kb on + strand, within Rv0654 at 750.529 kb on - strand, within Rv0654 at 750.654 kb on + strand, within Rv0654 at 750.654 kb on + strand, within Rv0654 at 750.654 kb on + strand, within Rv0654 at 750.654 kb on + strand, within Rv0654 at 750.654 kb on + strand, within Rv0654 at 750.655 kb on - strand, within Rv0654 at 750.655 kb on - strand, within Rv0654 at 750.667 kb on - strand, within Rv0654 at 750.838 kb on - strand, within Rv0654 at 750.930 kb on + strand, within Rv0654 at 750.930 kb on + strand, within Rv0654 at 750.930 kb on + strand, within Rv0654 at 750.934 kb on + strand, within Rv0654 at 750.934 kb on + strand, within Rv0654 at 750.934 kb on + strand, within Rv0654 at 750.934 kb on + strand, within Rv0654 at 750.934 kb on + strand, within Rv0654 at 750.934 kb on + strand, within Rv0654 at 750.934 kb on + strand, within Rv0654 at 750.935 kb on - strand, within Rv0654 at 750.935 kb on - strand, within Rv0654 at 750.935 kb on - strand, within Rv0654 at 750.935 kb on - strand, within Rv0654 at 750.936 kb on + strand, within Rv0654 at 750.936 kb on + strand, within Rv0654 at 750.937 kb on - strand, within Rv0654 at 750.937 kb on - strand, within Rv0654 at 750.937 kb on - strand, within Rv0654 at 750.947 kb on + strand, within Rv0654 at 750.947 kb on + strand, within Rv0654 at 750.948 kb on - strand, within Rv0654 at 750.948 kb on - strand, within Rv0654 at 750.948 kb on - strand, within Rv0654 at 750.948 kb on - strand, within Rv0654 at 750.954 kb on + strand, within Rv0654 at 750.955 kb on - strand, within Rv0654 at 751.182 kb on + strand, within Rv0654 at 751.245 kb on + strand, within Rv0654 at 751.245 kb on + strand, within Rv0654 at 751.246 kb on - strand, within Rv0654 at 751.247 kb on + strand, within Rv0654 at 751.248 kb on - strand, within Rv0654 at 751.615 kb on - strand at 751.814 kb on + strand, within Rv0655 at 751.814 kb on + strand, within Rv0655 at 751.881 kb on - strand, within Rv0655 at 752.023 kb on + strand, within Rv0655 at 752.024 kb on - strand, within Rv0655 at 752.024 kb on - strand, within Rv0655 at 752.268 kb on + strand, within Rv0655 at 752.268 kb on + strand, within Rv0655 at 752.268 kb on + strand, within Rv0655 at 752.269 kb on - strand, within Rv0655
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Amikacin di2 ug/mL remove 749,239 + -0.1 749,240 - +0.3 749,447 + Rv0653c 0.31 -0.6 749,447 + Rv0653c 0.31 -2.6 749,447 + Rv0653c 0.31 -1.0 749,448 - Rv0653c 0.31 -0.8 749,448 - Rv0653c 0.31 +0.6 749,634 + Rv0653c 0.57 -1.6 749,634 + Rv0653c 0.57 -1.1 749,635 - Rv0653c 0.58 -0.4 749,744 + Rv0653c 0.73 -1.3 749,744 + Rv0653c 0.73 -3.2 749,800 - Rv0653c 0.81 -0.6 750,073 + +0.5 750,073 + -0.3 750,073 + -0.7 750,074 - -0.6 750,074 - +0.8 750,130 - -0.4 750,130 - +0.4 750,138 - +0.2 750,177 + Rv0654 0.12 +0.4 750,177 + Rv0654 0.12 -0.7 750,178 - Rv0654 0.12 -0.3 750,408 + Rv0654 0.27 -0.8 750,409 - Rv0654 0.27 +0.5 750,409 - Rv0654 0.27 -0.3 750,475 - Rv0654 0.32 -0.8 750,528 + Rv0654 0.35 -1.0 750,529 - Rv0654 0.35 -0.4 750,654 + Rv0654 0.43 -2.2 750,654 + Rv0654 0.43 +0.6 750,654 + Rv0654 0.43 -0.3 750,654 + Rv0654 0.43 -0.8 750,654 + Rv0654 0.43 -0.1 750,655 - Rv0654 0.43 +0.1 750,655 - Rv0654 0.43 -0.5 750,667 - Rv0654 0.44 -0.5 750,838 - Rv0654 0.56 -0.5 750,930 + Rv0654 0.62 +0.9 750,930 + Rv0654 0.62 -0.3 750,930 + Rv0654 0.62 +0.1 750,934 + Rv0654 0.62 -1.0 750,934 + Rv0654 0.62 -0.4 750,934 + Rv0654 0.62 -0.1 750,934 + Rv0654 0.62 -0.4 750,934 + Rv0654 0.62 -0.8 750,934 + Rv0654 0.62 -0.4 750,934 + Rv0654 0.62 -0.8 750,935 - Rv0654 0.62 -0.4 750,935 - Rv0654 0.62 +0.8 750,935 - Rv0654 0.62 +0.9 750,935 - Rv0654 0.62 -0.3 750,936 + Rv0654 0.62 -0.4 750,936 + Rv0654 0.62 -0.1 750,937 - Rv0654 0.62 -0.7 750,937 - Rv0654 0.62 -0.7 750,937 - Rv0654 0.62 +0.2 750,947 + Rv0654 0.63 -0.5 750,947 + Rv0654 0.63 -0.4 750,948 - Rv0654 0.63 -0.3 750,948 - Rv0654 0.63 -0.6 750,948 - Rv0654 0.63 -1.5 750,948 - Rv0654 0.63 -3.3 750,954 + Rv0654 0.63 +1.0 750,955 - Rv0654 0.63 -0.2 751,182 + Rv0654 0.78 +0.3 751,245 + Rv0654 0.83 -0.3 751,245 + Rv0654 0.83 -0.6 751,246 - Rv0654 0.83 -0.2 751,247 + Rv0654 0.83 -0.3 751,248 - Rv0654 0.83 -0.6 751,615 - +0.0 751,814 + Rv0655 0.28 +2.9 751,814 + Rv0655 0.28 -0.6 751,881 - Rv0655 0.34 -1.4 752,023 + Rv0655 0.47 +1.9 752,024 - Rv0655 0.47 -1.1 752,024 - Rv0655 0.47 -2.3 752,268 + Rv0655 0.70 -2.2 752,268 + Rv0655 0.70 +0.1 752,268 + Rv0655 0.70 -3.0 752,269 - Rv0655 0.70 -0.8
Or see this region's nucleotide sequence