Experiment: 7H9 with Amikacin di2 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0435c and Rv0436c overlap by 4 nucleotides Rv0436c and Rv0437c overlap by 4 nucleotides Rv0437c and Rv0438c are separated by 60 nucleotides
Rv0435c: Rv0435c - Putative conserved ATPase, at 522,347 to 524,533
Rv0435c
Rv0436c: Rv0436c - Probable CDP-diacylglycerol--serine O-phosphatidyltransferase PssA (PS synthase) (phosphatidylserine synthase), at 524,530 to 525,390
Rv0436c
Rv0437c: Rv0437c - Possible phosphatidylserine decarboxylase Psd (PS decarboxylase), at 525,387 to 526,082
Rv0437c
Rv0438c: Rv0438c - Probable molybdopterin biosynthesis protein MoeA2, at 526,143 to 527,360
Rv0438c
Position (kb) 524
525
526 Strain fitness (log2 ratio) -2
-1
0
1
2 at 523.817 kb on + strand, within Rv0435c at 523.817 kb on + strand, within Rv0435c at 523.817 kb on + strand, within Rv0435c at 523.820 kb on + strand, within Rv0435c at 524.115 kb on - strand, within Rv0435c at 524.247 kb on + strand, within Rv0435c at 524.248 kb on - strand, within Rv0435c at 524.932 kb on + strand, within Rv0436c at 524.932 kb on + strand, within Rv0436c at 524.933 kb on - strand, within Rv0436c at 525.032 kb on + strand, within Rv0436c at 525.116 kb on + strand, within Rv0436c at 525.347 kb on - strand at 525.359 kb on - strand at 525.359 kb on - strand at 525.470 kb on - strand, within Rv0437c at 525.506 kb on - strand, within Rv0437c at 526.093 kb on + strand at 526.093 kb on + strand at 526.093 kb on + strand at 526.094 kb on - strand at 526.145 kb on - strand at 526.297 kb on - strand, within Rv0438c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Amikacin di2 ug/mL remove 523,817 + Rv0435c 0.67 +0.8 523,817 + Rv0435c 0.67 +0.3 523,817 + Rv0435c 0.67 +0.8 523,820 + Rv0435c 0.67 -1.6 524,115 - Rv0435c 0.81 +0.4 524,247 + Rv0435c 0.87 -0.5 524,248 - Rv0435c 0.87 -0.2 524,932 + Rv0436c 0.47 -0.2 524,932 + Rv0436c 0.47 -1.1 524,933 - Rv0436c 0.47 -0.9 525,032 + Rv0436c 0.58 +0.7 525,116 + Rv0436c 0.68 -0.6 525,347 - +0.0 525,359 - -1.7 525,359 - -1.6 525,470 - Rv0437c 0.12 +0.8 525,506 - Rv0437c 0.17 -2.0 526,093 + -0.9 526,093 + -0.5 526,093 + +0.1 526,094 - -0.6 526,145 - +1.2 526,297 - Rv0438c 0.13 +2.4
Or see this region's nucleotide sequence