Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0447c and Rv0448c overlap by 4 nucleotides Rv0448c and Rv0449c are separated by 59 nucleotides Rv0449c and Rv0450c are separated by 39 nucleotides
Rv0447c: Rv0447c - Probable cyclopropane-fatty-acyl-phospholipid synthase UfaA1 (cyclopropane fatty acid synthase) (CFA synthase), at 535,224 to 536,507
Rv0447c
Rv0448c: Rv0448c - Conserved hypothetical protein, at 536,504 to 537,169
Rv0448c
Rv0449c: Rv0449c - Conserved hypothetical protein, at 537,229 to 538,548
Rv0449c
Rv0450c: Rv0450c - Probable conserved transmembrane transport protein MmpL4, at 538,588 to 541,491
Rv0450c
Position (kb) 537
538
539 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 536.739 kb on - strand, within Rv0448c at 536.745 kb on + strand, within Rv0448c at 536.746 kb on - strand, within Rv0448c at 536.746 kb on - strand, within Rv0448c at 536.746 kb on - strand, within Rv0448c at 536.779 kb on - strand, within Rv0448c at 536.779 kb on - strand, within Rv0448c at 536.820 kb on - strand, within Rv0448c at 536.826 kb on + strand, within Rv0448c at 536.826 kb on + strand, within Rv0448c at 536.928 kb on + strand, within Rv0448c at 537.029 kb on - strand, within Rv0448c at 537.132 kb on + strand at 537.133 kb on - strand at 537.142 kb on - strand at 537.142 kb on - strand at 537.142 kb on - strand at 537.205 kb on - strand at 537.536 kb on + strand, within Rv0449c at 537.575 kb on + strand, within Rv0449c at 537.575 kb on + strand, within Rv0449c at 537.866 kb on + strand, within Rv0449c at 537.866 kb on + strand, within Rv0449c at 537.866 kb on + strand, within Rv0449c at 537.866 kb on + strand, within Rv0449c at 537.866 kb on + strand, within Rv0449c at 537.867 kb on - strand, within Rv0449c at 537.953 kb on + strand, within Rv0449c at 537.954 kb on - strand, within Rv0449c at 538.037 kb on + strand, within Rv0449c at 538.038 kb on - strand, within Rv0449c at 538.170 kb on - strand, within Rv0449c at 538.170 kb on - strand, within Rv0449c at 538.230 kb on - strand, within Rv0449c at 538.230 kb on - strand, within Rv0449c at 538.325 kb on + strand, within Rv0449c at 538.326 kb on - strand, within Rv0449c at 538.407 kb on - strand, within Rv0449c at 538.407 kb on - strand, within Rv0449c at 538.448 kb on + strand at 538.449 kb on - strand at 538.449 kb on - strand at 538.481 kb on + strand at 538.481 kb on + strand at 538.481 kb on + strand at 538.555 kb on + strand at 538.712 kb on - strand at 538.921 kb on + strand, within Rv0450c at 538.922 kb on - strand, within Rv0450c at 539.475 kb on + strand, within Rv0450c
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 536,739 - Rv0448c 0.35 -0.2 536,745 + Rv0448c 0.36 -0.9 536,746 - Rv0448c 0.36 +2.0 536,746 - Rv0448c 0.36 -0.1 536,746 - Rv0448c 0.36 +0.5 536,779 - Rv0448c 0.41 -0.7 536,779 - Rv0448c 0.41 -0.3 536,820 - Rv0448c 0.47 -1.2 536,826 + Rv0448c 0.48 -0.5 536,826 + Rv0448c 0.48 -0.3 536,928 + Rv0448c 0.64 +0.6 537,029 - Rv0448c 0.79 +0.7 537,132 + +0.4 537,133 - -0.1 537,142 - -0.4 537,142 - -0.6 537,142 - +0.3 537,205 - -0.9 537,536 + Rv0449c 0.23 +0.1 537,575 + Rv0449c 0.26 -0.0 537,575 + Rv0449c 0.26 -0.1 537,866 + Rv0449c 0.48 +0.2 537,866 + Rv0449c 0.48 +0.1 537,866 + Rv0449c 0.48 -0.9 537,866 + Rv0449c 0.48 +0.2 537,866 + Rv0449c 0.48 +0.6 537,867 - Rv0449c 0.48 +1.7 537,953 + Rv0449c 0.55 +0.1 537,954 - Rv0449c 0.55 +0.2 538,037 + Rv0449c 0.61 +0.0 538,038 - Rv0449c 0.61 +1.0 538,170 - Rv0449c 0.71 -0.1 538,170 - Rv0449c 0.71 +0.5 538,230 - Rv0449c 0.76 -0.0 538,230 - Rv0449c 0.76 +0.6 538,325 + Rv0449c 0.83 -0.2 538,326 - Rv0449c 0.83 +0.2 538,407 - Rv0449c 0.89 -0.2 538,407 - Rv0449c 0.89 -0.2 538,448 + +0.1 538,449 - -2.8 538,449 - -0.2 538,481 + +0.4 538,481 + -0.3 538,481 + -0.4 538,555 + -0.2 538,712 - -0.0 538,921 + Rv0450c 0.11 -0.3 538,922 - Rv0450c 0.12 +0.5 539,475 + Rv0450c 0.31 +0.7
Or see this region's nucleotide sequence