Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS19220 and HMPREF1058_RS19215 are separated by 125 nucleotides HMPREF1058_RS19215 and HMPREF1058_RS21565 are separated by 81 nucleotides
HMPREF1058_RS19220: HMPREF1058_RS19220 - tape measure protein, at 1 to 1,134
_RS19220
HMPREF1058_RS19215: HMPREF1058_RS19215 - hypothetical protein, at 1,260 to 1,973
_RS19215
HMPREF1058_RS21565: HMPREF1058_RS21565 - hypothetical protein, at 2,055 to 2,735
_RS21565
Position (kb) 0
1
2 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 0.116 kb on + strand, within HMPREF1058_RS19220 at 0.116 kb on + strand, within HMPREF1058_RS19220 at 0.127 kb on - strand, within HMPREF1058_RS19220 at 0.282 kb on + strand, within HMPREF1058_RS19220 at 0.311 kb on - strand, within HMPREF1058_RS19220 at 0.557 kb on - strand, within HMPREF1058_RS19220 at 0.632 kb on - strand, within HMPREF1058_RS19220 at 0.632 kb on - strand, within HMPREF1058_RS19220 at 0.674 kb on + strand, within HMPREF1058_RS19220 at 0.741 kb on + strand, within HMPREF1058_RS19220 at 0.839 kb on - strand, within HMPREF1058_RS19220 at 0.839 kb on - strand, within HMPREF1058_RS19220 at 0.934 kb on + strand, within HMPREF1058_RS19220 at 1.113 kb on + strand at 1.114 kb on - strand at 1.206 kb on + strand at 1.206 kb on + strand at 1.206 kb on + strand at 1.206 kb on + strand at 1.206 kb on + strand at 1.207 kb on - strand at 1.207 kb on - strand at 1.207 kb on - strand at 1.207 kb on - strand at 1.207 kb on - strand at 1.207 kb on - strand at 1.371 kb on + strand, within HMPREF1058_RS19215 at 1.372 kb on - strand at 1.405 kb on - strand, within HMPREF1058_RS19215 at 1.414 kb on + strand, within HMPREF1058_RS19215 at 1.414 kb on + strand, within HMPREF1058_RS19215 at 1.414 kb on + strand, within HMPREF1058_RS19215 at 1.415 kb on - strand, within HMPREF1058_RS19215 at 1.473 kb on + strand, within HMPREF1058_RS19215 at 1.474 kb on - strand, within HMPREF1058_RS19215 at 1.599 kb on - strand, within HMPREF1058_RS19215 at 1.599 kb on - strand, within HMPREF1058_RS19215 at 1.601 kb on + strand, within HMPREF1058_RS19215 at 1.611 kb on - strand, within HMPREF1058_RS19215 at 1.626 kb on + strand, within HMPREF1058_RS19215 at 1.790 kb on - strand, within HMPREF1058_RS19215 at 1.819 kb on - strand, within HMPREF1058_RS19215 at 1.836 kb on + strand, within HMPREF1058_RS19215 at 2.126 kb on + strand, within HMPREF1058_RS21565 at 2.127 kb on - strand, within HMPREF1058_RS21565
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 116 + HMPREF1058_RS19220 0.10 +1.7 116 + HMPREF1058_RS19220 0.10 -0.0 127 - HMPREF1058_RS19220 0.11 +2.9 282 + HMPREF1058_RS19220 0.25 +1.1 311 - HMPREF1058_RS19220 0.27 +0.3 557 - HMPREF1058_RS19220 0.49 +0.6 632 - HMPREF1058_RS19220 0.56 -0.0 632 - HMPREF1058_RS19220 0.56 +0.3 674 + HMPREF1058_RS19220 0.59 +2.2 741 + HMPREF1058_RS19220 0.65 +0.3 839 - HMPREF1058_RS19220 0.74 +2.5 839 - HMPREF1058_RS19220 0.74 -2.2 934 + HMPREF1058_RS19220 0.82 +0.1 1,113 + -0.5 1,114 - +0.1 1,206 + +1.0 1,206 + +1.8 1,206 + -2.2 1,206 + -1.2 1,206 + -2.3 1,207 - +0.6 1,207 - +0.7 1,207 - -0.0 1,207 - +0.6 1,207 - +2.4 1,207 - +6.2 1,371 + HMPREF1058_RS19215 0.16 -0.1 1,372 - -1.6 1,405 - HMPREF1058_RS19215 0.20 -0.0 1,414 + HMPREF1058_RS19215 0.22 -0.5 1,414 + HMPREF1058_RS19215 0.22 -1.3 1,414 + HMPREF1058_RS19215 0.22 +0.6 1,415 - HMPREF1058_RS19215 0.22 +2.0 1,473 + HMPREF1058_RS19215 0.30 +1.0 1,474 - HMPREF1058_RS19215 0.30 -1.0 1,599 - HMPREF1058_RS19215 0.47 -1.4 1,599 - HMPREF1058_RS19215 0.47 -1.0 1,601 + HMPREF1058_RS19215 0.48 -1.0 1,611 - HMPREF1058_RS19215 0.49 -3.5 1,626 + HMPREF1058_RS19215 0.51 +0.6 1,790 - HMPREF1058_RS19215 0.74 +0.6 1,819 - HMPREF1058_RS19215 0.78 -1.6 1,836 + HMPREF1058_RS19215 0.81 +3.4 2,126 + HMPREF1058_RS21565 0.10 +1.4 2,127 - HMPREF1058_RS21565 0.11 -0.0
Or see this region's nucleotide sequence