Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18880 and HMPREF1058_RS18875 are separated by 19 nucleotides HMPREF1058_RS18875 and HMPREF1058_RS18870 are separated by 416 nucleotides HMPREF1058_RS18870 and HMPREF1058_RS21385 are separated by 26 nucleotides HMPREF1058_RS21385 and HMPREF1058_RS18865 are separated by 68 nucleotides
HMPREF1058_RS18880: HMPREF1058_RS18880 - ATP-binding protein, at 53,047 to 53,976
_RS18880
HMPREF1058_RS18875: HMPREF1058_RS18875 - hypothetical protein, at 53,996 to 54,253
_RS18875
HMPREF1058_RS18870: HMPREF1058_RS18870 - hypothetical protein, at 54,670 to 54,897
_RS18870
HMPREF1058_RS21385: HMPREF1058_RS21385 - tRNA-OTHER, at 54,924 to 55,005
_RS21385
HMPREF1058_RS18865: HMPREF1058_RS18865 - hypothetical protein, at 55,074 to 55,259
_RS18865
Position (kb) 54
55 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 53.719 kb on - strand, within HMPREF1058_RS18880 at 53.803 kb on + strand, within HMPREF1058_RS18880 at 53.803 kb on + strand, within HMPREF1058_RS18880 at 53.803 kb on + strand, within HMPREF1058_RS18880 at 53.804 kb on - strand, within HMPREF1058_RS18880 at 53.805 kb on + strand, within HMPREF1058_RS18880 at 53.805 kb on + strand at 53.889 kb on + strand at 53.947 kb on + strand at 54.044 kb on + strand, within HMPREF1058_RS18875 at 54.463 kb on + strand at 54.465 kb on + strand at 54.465 kb on + strand at 54.595 kb on + strand at 54.595 kb on + strand at 54.595 kb on + strand at 54.693 kb on + strand, within HMPREF1058_RS18870 at 54.693 kb on + strand, within HMPREF1058_RS18870 at 54.748 kb on + strand, within HMPREF1058_RS18870 at 55.047 kb on + strand at 55.060 kb on + strand at 55.080 kb on + strand at 55.081 kb on - strand at 55.160 kb on + strand, within HMPREF1058_RS18865 at 55.218 kb on + strand, within HMPREF1058_RS18865 at 55.243 kb on - strand at 55.327 kb on + strand at 55.327 kb on + strand at 55.331 kb on + strand at 55.351 kb on + strand at 55.352 kb on - strand at 55.463 kb on + strand at 55.463 kb on + strand at 55.505 kb on + strand at 55.535 kb on + strand at 55.535 kb on + strand at 55.535 kb on + strand at 55.537 kb on + strand at 55.538 kb on - strand at 55.549 kb on + strand at 55.550 kb on - strand at 55.582 kb on + strand at 55.585 kb on + strand at 55.586 kb on - strand at 55.616 kb on + strand at 55.616 kb on + strand at 55.618 kb on + strand at 55.619 kb on - strand at 55.631 kb on - strand at 55.634 kb on + strand at 55.731 kb on + strand at 55.802 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 53,719 - HMPREF1058_RS18880 0.72 -1.7 53,803 + HMPREF1058_RS18880 0.81 -0.0 53,803 + HMPREF1058_RS18880 0.81 -0.2 53,803 + HMPREF1058_RS18880 0.81 +0.9 53,804 - HMPREF1058_RS18880 0.81 -1.6 53,805 + HMPREF1058_RS18880 0.82 -1.6 53,805 + -1.0 53,889 + -0.6 53,947 + -0.6 54,044 + HMPREF1058_RS18875 0.19 -0.4 54,463 + -0.5 54,465 + -1.6 54,465 + -1.3 54,595 + -1.6 54,595 + -0.0 54,595 + -0.7 54,693 + HMPREF1058_RS18870 0.10 -2.3 54,693 + HMPREF1058_RS18870 0.10 +1.6 54,748 + HMPREF1058_RS18870 0.34 +1.0 55,047 + -2.8 55,060 + +1.5 55,080 + +1.3 55,081 - -1.0 55,160 + HMPREF1058_RS18865 0.46 -0.6 55,218 + HMPREF1058_RS18865 0.77 -0.0 55,243 - -0.0 55,327 + +0.3 55,327 + -2.0 55,331 + +1.4 55,351 + +0.5 55,352 - -0.0 55,463 + -0.0 55,463 + +2.9 55,505 + -1.0 55,535 + -0.0 55,535 + -4.1 55,535 + -1.0 55,537 + -1.3 55,538 - -2.6 55,549 + -0.3 55,550 - -1.0 55,582 + -0.0 55,585 + +1.6 55,586 - -0.0 55,616 + -0.6 55,616 + +0.4 55,618 + -2.6 55,619 - -0.0 55,631 - -2.0 55,634 + +0.7 55,731 + +1.0 55,802 + +0.7
Or see this region's nucleotide sequence