Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18440 and HMPREF1058_RS18435 are separated by 537 nucleotides HMPREF1058_RS18435 and HMPREF1058_RS18430 are separated by 618 nucleotides
HMPREF1058_RS18440: HMPREF1058_RS18440 - hypothetical protein, at 155,180 to 156,712
_RS18440
HMPREF1058_RS18435: HMPREF1058_RS18435 - transcriptional regulator, at 157,250 to 158,083
_RS18435
HMPREF1058_RS18430: HMPREF1058_RS18430 - site-specific integrase, at 158,702 to 159,904
_RS18430
Position (kb) 157
158
159 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 156.252 kb on - strand, within HMPREF1058_RS18440 at 156.252 kb on - strand, within HMPREF1058_RS18440 at 156.254 kb on - strand, within HMPREF1058_RS18440 at 156.265 kb on + strand at 156.265 kb on + strand, within HMPREF1058_RS18440 at 156.268 kb on - strand, within HMPREF1058_RS18440 at 156.287 kb on - strand, within HMPREF1058_RS18440 at 156.337 kb on + strand, within HMPREF1058_RS18440 at 156.338 kb on - strand, within HMPREF1058_RS18440 at 156.401 kb on + strand at 156.403 kb on + strand, within HMPREF1058_RS18440 at 156.403 kb on + strand, within HMPREF1058_RS18440 at 156.403 kb on + strand, within HMPREF1058_RS18440 at 156.408 kb on - strand, within HMPREF1058_RS18440 at 156.436 kb on + strand, within HMPREF1058_RS18440 at 156.457 kb on + strand, within HMPREF1058_RS18440 at 156.483 kb on - strand, within HMPREF1058_RS18440 at 156.497 kb on - strand, within HMPREF1058_RS18440 at 156.531 kb on - strand, within HMPREF1058_RS18440 at 156.560 kb on + strand at 156.571 kb on - strand at 156.606 kb on - strand at 156.608 kb on - strand at 156.620 kb on - strand at 156.749 kb on + strand at 156.758 kb on - strand at 156.791 kb on + strand at 156.792 kb on - strand at 156.828 kb on + strand at 156.870 kb on + strand at 156.871 kb on - strand at 156.936 kb on + strand at 156.937 kb on - strand at 156.947 kb on - strand at 156.950 kb on + strand at 156.950 kb on + strand at 156.950 kb on + strand at 156.950 kb on + strand at 156.951 kb on - strand at 156.951 kb on - strand at 156.951 kb on - strand at 156.964 kb on - strand at 156.964 kb on - strand at 157.002 kb on + strand at 157.008 kb on + strand at 157.008 kb on + strand at 157.009 kb on - strand at 157.009 kb on - strand at 157.079 kb on - strand at 157.096 kb on + strand at 157.114 kb on + strand at 157.145 kb on - strand at 157.164 kb on + strand at 157.182 kb on + strand at 157.192 kb on + strand at 157.208 kb on - strand at 157.222 kb on - strand at 157.222 kb on - strand at 157.227 kb on - strand at 157.231 kb on - strand at 157.288 kb on + strand at 157.289 kb on - strand at 157.330 kb on + strand at 157.351 kb on + strand, within HMPREF1058_RS18435 at 157.351 kb on + strand, within HMPREF1058_RS18435 at 157.388 kb on - strand, within HMPREF1058_RS18435 at 157.388 kb on - strand, within HMPREF1058_RS18435 at 157.413 kb on + strand, within HMPREF1058_RS18435 at 157.413 kb on + strand, within HMPREF1058_RS18435 at 157.449 kb on + strand, within HMPREF1058_RS18435 at 157.450 kb on - strand, within HMPREF1058_RS18435 at 157.465 kb on - strand, within HMPREF1058_RS18435 at 157.501 kb on + strand, within HMPREF1058_RS18435 at 157.595 kb on + strand, within HMPREF1058_RS18435 at 157.596 kb on - strand, within HMPREF1058_RS18435 at 157.596 kb on - strand, within HMPREF1058_RS18435 at 157.727 kb on - strand, within HMPREF1058_RS18435 at 157.753 kb on + strand, within HMPREF1058_RS18435 at 157.769 kb on - strand, within HMPREF1058_RS18435 at 157.770 kb on + strand, within HMPREF1058_RS18435 at 157.863 kb on + strand, within HMPREF1058_RS18435 at 157.895 kb on - strand at 157.895 kb on - strand, within HMPREF1058_RS18435 at 157.896 kb on + strand, within HMPREF1058_RS18435 at 157.897 kb on - strand, within HMPREF1058_RS18435 at 158.096 kb on + strand at 158.201 kb on + strand at 158.255 kb on - strand at 158.265 kb on + strand at 158.299 kb on - strand at 158.299 kb on - strand at 158.305 kb on - strand at 158.334 kb on + strand at 158.394 kb on - strand at 158.434 kb on + strand at 158.482 kb on - strand at 158.499 kb on - strand at 158.504 kb on + strand at 158.539 kb on + strand at 158.540 kb on - strand at 158.543 kb on + strand at 158.544 kb on - strand at 158.569 kb on - strand at 158.739 kb on - strand at 158.767 kb on - strand at 158.872 kb on - strand, within HMPREF1058_RS18430 at 158.915 kb on - strand, within HMPREF1058_RS18430 at 158.950 kb on + strand, within HMPREF1058_RS18430 at 158.970 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 156,252 - HMPREF1058_RS18440 0.70 -2.0 156,252 - HMPREF1058_RS18440 0.70 -1.6 156,254 - HMPREF1058_RS18440 0.70 -1.7 156,265 + -0.0 156,265 + HMPREF1058_RS18440 0.71 -1.0 156,268 - HMPREF1058_RS18440 0.71 -2.8 156,287 - HMPREF1058_RS18440 0.72 -2.7 156,337 + HMPREF1058_RS18440 0.75 -0.3 156,338 - HMPREF1058_RS18440 0.76 +0.9 156,401 + -2.0 156,403 + HMPREF1058_RS18440 0.80 -2.8 156,403 + HMPREF1058_RS18440 0.80 -2.3 156,403 + HMPREF1058_RS18440 0.80 +2.9 156,408 - HMPREF1058_RS18440 0.80 -0.5 156,436 + HMPREF1058_RS18440 0.82 -0.6 156,457 + HMPREF1058_RS18440 0.83 -0.5 156,483 - HMPREF1058_RS18440 0.85 -0.0 156,497 - HMPREF1058_RS18440 0.86 +0.6 156,531 - HMPREF1058_RS18440 0.88 -0.0 156,560 + -3.2 156,571 - -1.0 156,606 - +2.3 156,608 - -0.6 156,620 - -1.0 156,749 + -0.3 156,758 - +1.1 156,791 + -2.3 156,792 - +0.6 156,828 + +2.0 156,870 + -1.8 156,871 - -0.6 156,936 + +0.4 156,937 - +2.0 156,947 - -1.6 156,950 + -1.8 156,950 + +0.6 156,950 + -2.3 156,950 + -2.0 156,951 - -2.3 156,951 - -0.4 156,951 - -0.0 156,964 - +1.4 156,964 - -2.8 157,002 + -2.0 157,008 + +0.6 157,008 + -0.0 157,009 - -0.4 157,009 - +0.2 157,079 - -1.6 157,096 + -1.6 157,114 + -1.8 157,145 - -0.0 157,164 + +1.6 157,182 + +1.6 157,192 + -1.6 157,208 - -1.6 157,222 - +0.5 157,222 - +0.3 157,227 - -1.6 157,231 - +0.6 157,288 + +0.9 157,289 - +0.3 157,330 + +1.2 157,351 + HMPREF1058_RS18435 0.12 +0.3 157,351 + HMPREF1058_RS18435 0.12 -0.4 157,388 - HMPREF1058_RS18435 0.17 -1.6 157,388 - HMPREF1058_RS18435 0.17 +1.3 157,413 + HMPREF1058_RS18435 0.20 +0.8 157,413 + HMPREF1058_RS18435 0.20 +1.2 157,449 + HMPREF1058_RS18435 0.24 +1.0 157,450 - HMPREF1058_RS18435 0.24 -1.6 157,465 - HMPREF1058_RS18435 0.26 +0.8 157,501 + HMPREF1058_RS18435 0.30 +1.0 157,595 + HMPREF1058_RS18435 0.41 +2.0 157,596 - HMPREF1058_RS18435 0.41 +3.9 157,596 - HMPREF1058_RS18435 0.41 +0.4 157,727 - HMPREF1058_RS18435 0.57 -1.0 157,753 + HMPREF1058_RS18435 0.60 -0.3 157,769 - HMPREF1058_RS18435 0.62 +1.3 157,770 + HMPREF1058_RS18435 0.62 -3.9 157,863 + HMPREF1058_RS18435 0.74 +1.2 157,895 - -1.0 157,895 - HMPREF1058_RS18435 0.77 +3.0 157,896 + HMPREF1058_RS18435 0.77 +3.2 157,897 - HMPREF1058_RS18435 0.78 +1.5 158,096 + -0.9 158,201 + +1.4 158,255 - +0.6 158,265 + -0.4 158,299 - -1.0 158,299 - -1.0 158,305 - -4.1 158,334 + +0.1 158,394 - -1.6 158,434 + +1.2 158,482 - -1.0 158,499 - -1.4 158,504 + -4.6 158,539 + +1.2 158,540 - -1.0 158,543 + -1.0 158,544 - -1.8 158,569 - -2.0 158,739 - -1.0 158,767 - -4.1 158,872 - HMPREF1058_RS18430 0.14 -1.6 158,915 - HMPREF1058_RS18430 0.18 -1.0 158,950 + HMPREF1058_RS18430 0.21 +1.9 158,970 - +1.0
Or see this region's nucleotide sequence