Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18385 and HMPREF1058_RS18380 are separated by 5 nucleotides HMPREF1058_RS18380 and HMPREF1058_RS18375 are separated by 33 nucleotides
HMPREF1058_RS18385: HMPREF1058_RS18385 - alpha-xylosidase, at 170,213 to 172,459
_RS18385
HMPREF1058_RS18380: HMPREF1058_RS18380 - cobalamin-binding protein, at 172,465 to 174,267
_RS18380
HMPREF1058_RS18375: HMPREF1058_RS18375 - sodium:solute symporter, at 174,301 to 175,872
_RS18375
Position (kb) 172
173
174
175 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 171.533 kb on + strand, within HMPREF1058_RS18385 at 171.656 kb on + strand, within HMPREF1058_RS18385 at 171.905 kb on - strand, within HMPREF1058_RS18385 at 171.921 kb on + strand, within HMPREF1058_RS18385 at 171.921 kb on + strand, within HMPREF1058_RS18385 at 171.921 kb on + strand, within HMPREF1058_RS18385 at 171.922 kb on - strand, within HMPREF1058_RS18385 at 171.922 kb on - strand, within HMPREF1058_RS18385 at 171.922 kb on - strand, within HMPREF1058_RS18385 at 171.923 kb on + strand, within HMPREF1058_RS18385 at 171.924 kb on - strand, within HMPREF1058_RS18385 at 171.924 kb on - strand, within HMPREF1058_RS18385 at 171.925 kb on + strand, within HMPREF1058_RS18385 at 172.048 kb on + strand, within HMPREF1058_RS18385 at 172.055 kb on - strand, within HMPREF1058_RS18385 at 172.057 kb on - strand, within HMPREF1058_RS18385 at 172.057 kb on - strand, within HMPREF1058_RS18385 at 172.057 kb on - strand, within HMPREF1058_RS18385 at 172.061 kb on + strand, within HMPREF1058_RS18385 at 172.061 kb on + strand, within HMPREF1058_RS18385 at 172.061 kb on + strand, within HMPREF1058_RS18385 at 172.061 kb on + strand at 172.061 kb on + strand, within HMPREF1058_RS18385 at 172.063 kb on + strand, within HMPREF1058_RS18385 at 172.063 kb on + strand, within HMPREF1058_RS18385 at 172.063 kb on + strand, within HMPREF1058_RS18385 at 172.064 kb on - strand, within HMPREF1058_RS18385 at 172.064 kb on - strand, within HMPREF1058_RS18385 at 172.334 kb on + strand at 172.334 kb on + strand at 172.335 kb on - strand at 172.427 kb on + strand at 172.509 kb on + strand at 172.862 kb on + strand, within HMPREF1058_RS18380 at 172.982 kb on + strand, within HMPREF1058_RS18380 at 173.032 kb on + strand, within HMPREF1058_RS18380 at 173.033 kb on - strand, within HMPREF1058_RS18380 at 173.685 kb on - strand, within HMPREF1058_RS18380 at 173.690 kb on + strand, within HMPREF1058_RS18380 at 173.888 kb on + strand, within HMPREF1058_RS18380 at 173.902 kb on + strand, within HMPREF1058_RS18380 at 173.990 kb on + strand, within HMPREF1058_RS18380 at 173.990 kb on + strand, within HMPREF1058_RS18380 at 173.996 kb on + strand, within HMPREF1058_RS18380 at 173.996 kb on + strand, within HMPREF1058_RS18380 at 173.997 kb on - strand, within HMPREF1058_RS18380 at 174.088 kb on + strand at 174.089 kb on - strand at 174.089 kb on - strand at 174.089 kb on - strand at 174.089 kb on - strand at 174.091 kb on - strand at 174.310 kb on - strand at 174.321 kb on + strand at 174.365 kb on + strand at 174.366 kb on - strand at 174.541 kb on + strand, within HMPREF1058_RS18375 at 174.541 kb on + strand, within HMPREF1058_RS18375 at 174.852 kb on - strand, within HMPREF1058_RS18375 at 174.892 kb on - strand, within HMPREF1058_RS18375 at 174.908 kb on - strand, within HMPREF1058_RS18375 at 175.153 kb on + strand, within HMPREF1058_RS18375 at 175.154 kb on - strand, within HMPREF1058_RS18375 at 175.216 kb on + strand, within HMPREF1058_RS18375
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 171,533 + HMPREF1058_RS18385 0.59 -0.0 171,656 + HMPREF1058_RS18385 0.64 -1.6 171,905 - HMPREF1058_RS18385 0.75 +0.7 171,921 + HMPREF1058_RS18385 0.76 -1.5 171,921 + HMPREF1058_RS18385 0.76 -0.8 171,921 + HMPREF1058_RS18385 0.76 -0.0 171,922 - HMPREF1058_RS18385 0.76 -0.3 171,922 - HMPREF1058_RS18385 0.76 +2.6 171,922 - HMPREF1058_RS18385 0.76 +1.9 171,923 + HMPREF1058_RS18385 0.76 -1.9 171,924 - HMPREF1058_RS18385 0.76 +2.3 171,924 - HMPREF1058_RS18385 0.76 +2.8 171,925 + HMPREF1058_RS18385 0.76 +0.7 172,048 + HMPREF1058_RS18385 0.82 -0.0 172,055 - HMPREF1058_RS18385 0.82 +1.2 172,057 - HMPREF1058_RS18385 0.82 +0.4 172,057 - HMPREF1058_RS18385 0.82 -0.0 172,057 - HMPREF1058_RS18385 0.82 +3.4 172,061 + HMPREF1058_RS18385 0.82 -0.8 172,061 + HMPREF1058_RS18385 0.82 -2.8 172,061 + HMPREF1058_RS18385 0.82 -1.0 172,061 + +3.6 172,061 + HMPREF1058_RS18385 0.82 -2.6 172,063 + HMPREF1058_RS18385 0.82 -1.0 172,063 + HMPREF1058_RS18385 0.82 -1.7 172,063 + HMPREF1058_RS18385 0.82 -0.0 172,064 - HMPREF1058_RS18385 0.82 +1.3 172,064 - HMPREF1058_RS18385 0.82 -2.3 172,334 + -0.8 172,334 + -0.8 172,335 - +4.6 172,427 + -0.0 172,509 + -0.0 172,862 + HMPREF1058_RS18380 0.22 +3.7 172,982 + HMPREF1058_RS18380 0.29 -0.7 173,032 + HMPREF1058_RS18380 0.31 +1.0 173,033 - HMPREF1058_RS18380 0.32 +0.7 173,685 - HMPREF1058_RS18380 0.68 +0.7 173,690 + HMPREF1058_RS18380 0.68 +2.4 173,888 + HMPREF1058_RS18380 0.79 -1.6 173,902 + HMPREF1058_RS18380 0.80 -1.0 173,990 + HMPREF1058_RS18380 0.85 +1.5 173,990 + HMPREF1058_RS18380 0.85 +0.2 173,996 + HMPREF1058_RS18380 0.85 +1.4 173,996 + HMPREF1058_RS18380 0.85 +3.2 173,997 - HMPREF1058_RS18380 0.85 -0.6 174,088 + +0.9 174,089 - -1.0 174,089 - -1.3 174,089 - +1.4 174,089 - -1.5 174,091 - +3.7 174,310 - -2.3 174,321 + -2.6 174,365 + +1.5 174,366 - -1.0 174,541 + HMPREF1058_RS18375 0.15 -4.8 174,541 + HMPREF1058_RS18375 0.15 +1.0 174,852 - HMPREF1058_RS18375 0.35 +0.5 174,892 - HMPREF1058_RS18375 0.38 -0.3 174,908 - HMPREF1058_RS18375 0.39 -0.0 175,153 + HMPREF1058_RS18375 0.54 +0.8 175,154 - HMPREF1058_RS18375 0.54 +0.6 175,216 + HMPREF1058_RS18375 0.58 -1.2
Or see this region's nucleotide sequence