Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS18150

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS18160 and HMPREF1058_RS18155 are separated by 139 nucleotidesHMPREF1058_RS18155 and HMPREF1058_RS18150 are separated by 9 nucleotidesHMPREF1058_RS18150 and HMPREF1058_RS18145 are separated by 2 nucleotides HMPREF1058_RS18160: HMPREF1058_RS18160 - hypothetical protein, at 245,271 to 245,513 _RS18160 HMPREF1058_RS18155: HMPREF1058_RS18155 - helix-turn-helix transcriptional regulator, at 245,653 to 246,315 _RS18155 HMPREF1058_RS18150: HMPREF1058_RS18150 - Fic family protein, at 246,325 to 247,065 _RS18150 HMPREF1058_RS18145: HMPREF1058_RS18145 - Fic family protein, at 247,068 to 247,829 _RS18145 Position (kb) 246 247 248Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 245.407 kb on + strand, within HMPREF1058_RS18160at 245.407 kb on + strand, within HMPREF1058_RS18160at 245.408 kb on - strand, within HMPREF1058_RS18160at 245.408 kb on - strand, within HMPREF1058_RS18160at 245.644 kb on + strandat 245.672 kb on + strandat 245.699 kb on + strandat 245.898 kb on + strand, within HMPREF1058_RS18155at 246.081 kb on + strand, within HMPREF1058_RS18155at 246.138 kb on + strand, within HMPREF1058_RS18155at 246.142 kb on + strand, within HMPREF1058_RS18155at 246.214 kb on - strand, within HMPREF1058_RS18155at 246.214 kb on - strand, within HMPREF1058_RS18155at 246.291 kb on + strandat 246.294 kb on + strandat 246.324 kb on + strandat 246.325 kb on - strandat 246.429 kb on - strand, within HMPREF1058_RS18150at 246.437 kb on + strand, within HMPREF1058_RS18150at 246.437 kb on + strand, within HMPREF1058_RS18150at 246.448 kb on + strand, within HMPREF1058_RS18150at 246.449 kb on - strand, within HMPREF1058_RS18150at 246.449 kb on - strand, within HMPREF1058_RS18150at 246.472 kb on - strand, within HMPREF1058_RS18150at 246.478 kb on - strand, within HMPREF1058_RS18150at 246.481 kb on + strand, within HMPREF1058_RS18150at 246.481 kb on + strand, within HMPREF1058_RS18150at 246.482 kb on - strand, within HMPREF1058_RS18150at 246.532 kb on + strand, within HMPREF1058_RS18150at 246.532 kb on + strand, within HMPREF1058_RS18150at 246.621 kb on - strand, within HMPREF1058_RS18150at 246.732 kb on + strand, within HMPREF1058_RS18150at 246.732 kb on + strand, within HMPREF1058_RS18150at 246.734 kb on + strand, within HMPREF1058_RS18150at 246.756 kb on + strand, within HMPREF1058_RS18150at 246.780 kb on - strand, within HMPREF1058_RS18150at 246.800 kb on - strand, within HMPREF1058_RS18150at 246.843 kb on - strand, within HMPREF1058_RS18150at 246.922 kb on - strand, within HMPREF1058_RS18150at 246.956 kb on + strand, within HMPREF1058_RS18150at 246.957 kb on - strand, within HMPREF1058_RS18150at 246.957 kb on - strand, within HMPREF1058_RS18150at 246.964 kb on + strand, within HMPREF1058_RS18150at 246.977 kb on + strand, within HMPREF1058_RS18150at 247.041 kb on - strandat 247.058 kb on + strandat 247.058 kb on + strandat 247.063 kb on + strandat 247.063 kb on + strandat 247.064 kb on - strandat 247.067 kb on + strandat 247.067 kb on + strandat 247.067 kb on + strandat 247.079 kb on + strandat 247.202 kb on + strand, within HMPREF1058_RS18145at 247.220 kb on + strand, within HMPREF1058_RS18145at 247.231 kb on + strand, within HMPREF1058_RS18145at 247.250 kb on - strand, within HMPREF1058_RS18145at 247.265 kb on + strand, within HMPREF1058_RS18145at 247.269 kb on - strand, within HMPREF1058_RS18145at 247.322 kb on + strand, within HMPREF1058_RS18145at 247.325 kb on + strand, within HMPREF1058_RS18145at 247.329 kb on + strand, within HMPREF1058_RS18145at 247.329 kb on + strand, within HMPREF1058_RS18145at 247.329 kb on + strand, within HMPREF1058_RS18145at 247.332 kb on - strand, within HMPREF1058_RS18145at 247.341 kb on - strand, within HMPREF1058_RS18145at 247.357 kb on + strand, within HMPREF1058_RS18145at 247.357 kb on + strand, within HMPREF1058_RS18145at 247.358 kb on - strand, within HMPREF1058_RS18145at 247.387 kb on + strand, within HMPREF1058_RS18145at 247.387 kb on + strand, within HMPREF1058_RS18145at 247.466 kb on + strand, within HMPREF1058_RS18145at 247.467 kb on - strand, within HMPREF1058_RS18145at 247.467 kb on - strand, within HMPREF1058_RS18145at 247.473 kb on - strand, within HMPREF1058_RS18145at 247.543 kb on + strand, within HMPREF1058_RS18145at 247.543 kb on + strand, within HMPREF1058_RS18145at 247.579 kb on + strand, within HMPREF1058_RS18145at 247.579 kb on + strand, within HMPREF1058_RS18145at 247.610 kb on + strand, within HMPREF1058_RS18145at 247.612 kb on + strand, within HMPREF1058_RS18145at 247.613 kb on - strand, within HMPREF1058_RS18145at 247.628 kb on + strand, within HMPREF1058_RS18145at 247.653 kb on + strand, within HMPREF1058_RS18145at 247.676 kb on + strand, within HMPREF1058_RS18145at 247.676 kb on + strand, within HMPREF1058_RS18145at 247.677 kb on - strand, within HMPREF1058_RS18145at 247.679 kb on + strand, within HMPREF1058_RS18145at 247.680 kb on - strand, within HMPREF1058_RS18145at 247.698 kb on - strand, within HMPREF1058_RS18145at 247.719 kb on + strand, within HMPREF1058_RS18145at 247.743 kb on - strand, within HMPREF1058_RS18145at 247.837 kb on + strandat 247.888 kb on + strandat 247.917 kb on - strandat 247.917 kb on - strandat 247.917 kb on - strandat 247.946 kb on - strandat 247.983 kb on + strandat 247.984 kb on - strandat 248.013 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
remove
245,407 + HMPREF1058_RS18160 0.56 +0.2
245,407 + HMPREF1058_RS18160 0.56 -1.2
245,408 - HMPREF1058_RS18160 0.56 -0.0
245,408 - HMPREF1058_RS18160 0.56 -0.6
245,644 + -2.6
245,672 + -1.0
245,699 + +0.5
245,898 + HMPREF1058_RS18155 0.37 -2.6
246,081 + HMPREF1058_RS18155 0.65 -2.8
246,138 + HMPREF1058_RS18155 0.73 +1.3
246,142 + HMPREF1058_RS18155 0.74 +2.9
246,214 - HMPREF1058_RS18155 0.85 -2.4
246,214 - HMPREF1058_RS18155 0.85 -0.0
246,291 + -1.4
246,294 + +0.9
246,324 + -1.6
246,325 - -3.5
246,429 - HMPREF1058_RS18150 0.14 -1.6
246,437 + HMPREF1058_RS18150 0.15 +2.1
246,437 + HMPREF1058_RS18150 0.15 -0.0
246,448 + HMPREF1058_RS18150 0.17 -0.0
246,449 - HMPREF1058_RS18150 0.17 +1.0
246,449 - HMPREF1058_RS18150 0.17 -1.6
246,472 - HMPREF1058_RS18150 0.20 -2.4
246,478 - HMPREF1058_RS18150 0.21 -1.6
246,481 + HMPREF1058_RS18150 0.21 -0.8
246,481 + HMPREF1058_RS18150 0.21 -1.0
246,482 - HMPREF1058_RS18150 0.21 -2.0
246,532 + HMPREF1058_RS18150 0.28 -1.0
246,532 + HMPREF1058_RS18150 0.28 +0.6
246,621 - HMPREF1058_RS18150 0.40 +2.9
246,732 + HMPREF1058_RS18150 0.55 -0.0
246,732 + HMPREF1058_RS18150 0.55 +2.9
246,734 + HMPREF1058_RS18150 0.55 +2.0
246,756 + HMPREF1058_RS18150 0.58 +0.6
246,780 - HMPREF1058_RS18150 0.61 +1.9
246,800 - HMPREF1058_RS18150 0.64 -2.4
246,843 - HMPREF1058_RS18150 0.70 -2.0
246,922 - HMPREF1058_RS18150 0.81 -0.0
246,956 + HMPREF1058_RS18150 0.85 +1.2
246,957 - HMPREF1058_RS18150 0.85 +0.7
246,957 - HMPREF1058_RS18150 0.85 -2.4
246,964 + HMPREF1058_RS18150 0.86 +2.6
246,977 + HMPREF1058_RS18150 0.88 +1.6
247,041 - -2.4
247,058 + -4.3
247,058 + +0.1
247,063 + +1.3
247,063 + +1.6
247,064 - +0.6
247,067 + +1.0
247,067 + -1.3
247,067 + +1.0
247,079 + -0.5
247,202 + HMPREF1058_RS18145 0.18 +0.6
247,220 + HMPREF1058_RS18145 0.20 -1.6
247,231 + HMPREF1058_RS18145 0.21 -0.5
247,250 - HMPREF1058_RS18145 0.24 -0.2
247,265 + HMPREF1058_RS18145 0.26 +1.3
247,269 - HMPREF1058_RS18145 0.26 -0.9
247,322 + HMPREF1058_RS18145 0.33 -0.7
247,325 + HMPREF1058_RS18145 0.34 +1.5
247,329 + HMPREF1058_RS18145 0.34 -1.8
247,329 + HMPREF1058_RS18145 0.34 -1.0
247,329 + HMPREF1058_RS18145 0.34 +0.8
247,332 - HMPREF1058_RS18145 0.35 -2.2
247,341 - HMPREF1058_RS18145 0.36 +1.5
247,357 + HMPREF1058_RS18145 0.38 -1.6
247,357 + HMPREF1058_RS18145 0.38 -0.0
247,358 - HMPREF1058_RS18145 0.38 -3.6
247,387 + HMPREF1058_RS18145 0.42 +0.4
247,387 + HMPREF1058_RS18145 0.42 -0.4
247,466 + HMPREF1058_RS18145 0.52 -1.2
247,467 - HMPREF1058_RS18145 0.52 -1.0
247,467 - HMPREF1058_RS18145 0.52 +1.3
247,473 - HMPREF1058_RS18145 0.53 -2.8
247,543 + HMPREF1058_RS18145 0.62 -0.0
247,543 + HMPREF1058_RS18145 0.62 -3.7
247,579 + HMPREF1058_RS18145 0.67 -0.0
247,579 + HMPREF1058_RS18145 0.67 +0.7
247,610 + HMPREF1058_RS18145 0.71 +0.2
247,612 + HMPREF1058_RS18145 0.71 +1.5
247,613 - HMPREF1058_RS18145 0.72 +1.5
247,628 + HMPREF1058_RS18145 0.73 +1.5
247,653 + HMPREF1058_RS18145 0.77 -1.6
247,676 + HMPREF1058_RS18145 0.80 +0.1
247,676 + HMPREF1058_RS18145 0.80 +0.6
247,677 - HMPREF1058_RS18145 0.80 -0.9
247,679 + HMPREF1058_RS18145 0.80 -0.0
247,680 - HMPREF1058_RS18145 0.80 +0.5
247,698 - HMPREF1058_RS18145 0.83 -2.0
247,719 + HMPREF1058_RS18145 0.85 +0.2
247,743 - HMPREF1058_RS18145 0.89 +1.5
247,837 + -0.0
247,888 + +0.0
247,917 - +0.2
247,917 - -0.8
247,917 - -0.5
247,946 - -0.3
247,983 + +0.2
247,984 - -0.0
248,013 + +1.3

Or see this region's nucleotide sequence