Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17810 and HMPREF1058_RS17805 are separated by 52 nucleotides HMPREF1058_RS17805 and HMPREF1058_RS17800 are separated by 89 nucleotides HMPREF1058_RS17800 and HMPREF1058_RS17795 overlap by 4 nucleotides
HMPREF1058_RS17810: HMPREF1058_RS17810 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 330,477 to 331,298
_RS17810
HMPREF1058_RS17805: HMPREF1058_RS17805 - HAD family hydrolase, at 331,351 to 332,001
_RS17805
HMPREF1058_RS17800: HMPREF1058_RS17800 - MATE family efflux transporter, at 332,091 to 333,443
_RS17800
HMPREF1058_RS17795: HMPREF1058_RS17795 - potassium/proton antiporter, at 333,440 to 334,888
_RS17795
Position (kb) 332
333
334 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 331.363 kb on - strand at 331.426 kb on + strand, within HMPREF1058_RS17805 at 331.650 kb on + strand, within HMPREF1058_RS17805 at 331.651 kb on - strand, within HMPREF1058_RS17805 at 331.654 kb on + strand, within HMPREF1058_RS17805 at 331.655 kb on - strand, within HMPREF1058_RS17805 at 331.693 kb on - strand, within HMPREF1058_RS17805 at 331.693 kb on - strand, within HMPREF1058_RS17805 at 331.697 kb on - strand, within HMPREF1058_RS17805 at 331.697 kb on - strand, within HMPREF1058_RS17805 at 331.697 kb on - strand, within HMPREF1058_RS17805 at 331.756 kb on - strand, within HMPREF1058_RS17805 at 331.756 kb on - strand, within HMPREF1058_RS17805 at 331.838 kb on + strand, within HMPREF1058_RS17805 at 331.925 kb on - strand, within HMPREF1058_RS17805 at 331.926 kb on + strand, within HMPREF1058_RS17805 at 331.927 kb on - strand, within HMPREF1058_RS17805 at 331.927 kb on - strand, within HMPREF1058_RS17805 at 331.927 kb on - strand, within HMPREF1058_RS17805 at 331.929 kb on + strand, within HMPREF1058_RS17805 at 331.930 kb on - strand, within HMPREF1058_RS17805 at 331.932 kb on - strand, within HMPREF1058_RS17805 at 332.113 kb on + strand at 332.213 kb on - strand at 332.513 kb on + strand, within HMPREF1058_RS17800 at 332.513 kb on + strand, within HMPREF1058_RS17800 at 332.513 kb on + strand, within HMPREF1058_RS17800 at 332.514 kb on - strand, within HMPREF1058_RS17800 at 332.516 kb on - strand, within HMPREF1058_RS17800 at 332.538 kb on + strand, within HMPREF1058_RS17800 at 332.538 kb on + strand, within HMPREF1058_RS17800 at 332.539 kb on - strand, within HMPREF1058_RS17800 at 332.543 kb on - strand, within HMPREF1058_RS17800 at 332.562 kb on - strand, within HMPREF1058_RS17800 at 332.631 kb on - strand, within HMPREF1058_RS17800 at 332.756 kb on + strand, within HMPREF1058_RS17800 at 332.823 kb on - strand, within HMPREF1058_RS17800 at 332.867 kb on + strand, within HMPREF1058_RS17800 at 333.000 kb on + strand, within HMPREF1058_RS17800 at 333.003 kb on - strand, within HMPREF1058_RS17800 at 333.049 kb on - strand, within HMPREF1058_RS17800 at 333.126 kb on - strand, within HMPREF1058_RS17800 at 333.126 kb on - strand, within HMPREF1058_RS17800 at 333.149 kb on + strand, within HMPREF1058_RS17800 at 333.296 kb on - strand, within HMPREF1058_RS17800 at 333.311 kb on - strand at 333.313 kb on + strand at 333.314 kb on - strand at 333.440 kb on - strand at 333.483 kb on + strand at 333.496 kb on + strand at 333.496 kb on + strand at 333.535 kb on + strand at 333.641 kb on - strand, within HMPREF1058_RS17795 at 333.743 kb on - strand, within HMPREF1058_RS17795 at 333.743 kb on - strand, within HMPREF1058_RS17795 at 333.905 kb on - strand, within HMPREF1058_RS17795 at 333.956 kb on + strand, within HMPREF1058_RS17795 at 333.957 kb on - strand, within HMPREF1058_RS17795 at 333.957 kb on - strand, within HMPREF1058_RS17795 at 333.958 kb on + strand, within HMPREF1058_RS17795 at 333.958 kb on + strand, within HMPREF1058_RS17795 at 333.958 kb on + strand, within HMPREF1058_RS17795 at 333.964 kb on + strand, within HMPREF1058_RS17795 at 333.964 kb on + strand, within HMPREF1058_RS17795 at 333.965 kb on - strand, within HMPREF1058_RS17795 at 333.965 kb on - strand, within HMPREF1058_RS17795 at 334.133 kb on - strand, within HMPREF1058_RS17795 at 334.209 kb on - strand, within HMPREF1058_RS17795 at 334.213 kb on - strand, within HMPREF1058_RS17795 at 334.300 kb on + strand, within HMPREF1058_RS17795
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 331,363 - -0.7 331,426 + HMPREF1058_RS17805 0.12 -2.4 331,650 + HMPREF1058_RS17805 0.46 +1.2 331,651 - HMPREF1058_RS17805 0.46 -1.1 331,654 + HMPREF1058_RS17805 0.47 -1.1 331,655 - HMPREF1058_RS17805 0.47 +1.3 331,693 - HMPREF1058_RS17805 0.53 +0.8 331,693 - HMPREF1058_RS17805 0.53 -2.8 331,697 - HMPREF1058_RS17805 0.53 -1.8 331,697 - HMPREF1058_RS17805 0.53 -1.7 331,697 - HMPREF1058_RS17805 0.53 -0.5 331,756 - HMPREF1058_RS17805 0.62 -1.2 331,756 - HMPREF1058_RS17805 0.62 -2.4 331,838 + HMPREF1058_RS17805 0.75 -0.7 331,925 - HMPREF1058_RS17805 0.88 -0.8 331,926 + HMPREF1058_RS17805 0.88 -0.7 331,927 - HMPREF1058_RS17805 0.88 -3.1 331,927 - HMPREF1058_RS17805 0.88 -1.7 331,927 - HMPREF1058_RS17805 0.88 -3.1 331,929 + HMPREF1058_RS17805 0.89 +4.8 331,930 - HMPREF1058_RS17805 0.89 -2.1 331,932 - HMPREF1058_RS17805 0.89 -3.5 332,113 + -1.1 332,213 - -0.1 332,513 + HMPREF1058_RS17800 0.31 -0.1 332,513 + HMPREF1058_RS17800 0.31 +1.3 332,513 + HMPREF1058_RS17800 0.31 -0.2 332,514 - HMPREF1058_RS17800 0.31 +0.7 332,516 - HMPREF1058_RS17800 0.31 -1.4 332,538 + HMPREF1058_RS17800 0.33 -1.9 332,538 + HMPREF1058_RS17800 0.33 -0.1 332,539 - HMPREF1058_RS17800 0.33 -0.4 332,543 - HMPREF1058_RS17800 0.33 +1.5 332,562 - HMPREF1058_RS17800 0.35 -0.7 332,631 - HMPREF1058_RS17800 0.40 -0.7 332,756 + HMPREF1058_RS17800 0.49 +1.8 332,823 - HMPREF1058_RS17800 0.54 +1.5 332,867 + HMPREF1058_RS17800 0.57 -1.7 333,000 + HMPREF1058_RS17800 0.67 -0.4 333,003 - HMPREF1058_RS17800 0.67 -0.7 333,049 - HMPREF1058_RS17800 0.71 -0.1 333,126 - HMPREF1058_RS17800 0.76 -3.8 333,126 - HMPREF1058_RS17800 0.76 +2.2 333,149 + HMPREF1058_RS17800 0.78 -1.1 333,296 - HMPREF1058_RS17800 0.89 +2.6 333,311 - -1.1 333,313 + -0.1 333,314 - +1.8 333,440 - -2.2 333,483 + -1.1 333,496 + +1.1 333,496 + +2.1 333,535 + -2.7 333,641 - HMPREF1058_RS17795 0.14 -2.7 333,743 - HMPREF1058_RS17795 0.21 -0.1 333,743 - HMPREF1058_RS17795 0.21 -0.9 333,905 - HMPREF1058_RS17795 0.32 -1.4 333,956 + HMPREF1058_RS17795 0.36 +2.7 333,957 - HMPREF1058_RS17795 0.36 -0.8 333,957 - HMPREF1058_RS17795 0.36 -1.1 333,958 + HMPREF1058_RS17795 0.36 +0.7 333,958 + HMPREF1058_RS17795 0.36 +0.9 333,958 + HMPREF1058_RS17795 0.36 +0.5 333,964 + HMPREF1058_RS17795 0.36 +0.9 333,964 + HMPREF1058_RS17795 0.36 +0.2 333,965 - HMPREF1058_RS17795 0.36 +1.5 333,965 - HMPREF1058_RS17795 0.36 -2.4 334,133 - HMPREF1058_RS17795 0.48 +0.6 334,209 - HMPREF1058_RS17795 0.53 +1.4 334,213 - HMPREF1058_RS17795 0.53 -0.4 334,300 + HMPREF1058_RS17795 0.59 +0.5
Or see this region's nucleotide sequence