Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17800 and HMPREF1058_RS17795 overlap by 4 nucleotides HMPREF1058_RS17795 and HMPREF1058_RS17790 are separated by 76 nucleotides
HMPREF1058_RS17800: HMPREF1058_RS17800 - MATE family efflux transporter, at 332,091 to 333,443
_RS17800
HMPREF1058_RS17795: HMPREF1058_RS17795 - potassium/proton antiporter, at 333,440 to 334,888
_RS17795
HMPREF1058_RS17790: HMPREF1058_RS17790 - Nramp family divalent metal transporter, at 334,965 to 336,218
_RS17790
Position (kb) 333
334
335 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 332.513 kb on + strand, within HMPREF1058_RS17800 at 332.513 kb on + strand, within HMPREF1058_RS17800 at 332.513 kb on + strand, within HMPREF1058_RS17800 at 332.514 kb on - strand, within HMPREF1058_RS17800 at 332.516 kb on - strand, within HMPREF1058_RS17800 at 332.538 kb on + strand, within HMPREF1058_RS17800 at 332.538 kb on + strand, within HMPREF1058_RS17800 at 332.539 kb on - strand, within HMPREF1058_RS17800 at 332.543 kb on - strand, within HMPREF1058_RS17800 at 332.562 kb on - strand, within HMPREF1058_RS17800 at 332.631 kb on - strand, within HMPREF1058_RS17800 at 332.756 kb on + strand, within HMPREF1058_RS17800 at 332.823 kb on - strand, within HMPREF1058_RS17800 at 332.867 kb on + strand, within HMPREF1058_RS17800 at 333.000 kb on + strand, within HMPREF1058_RS17800 at 333.003 kb on - strand, within HMPREF1058_RS17800 at 333.049 kb on - strand, within HMPREF1058_RS17800 at 333.126 kb on - strand, within HMPREF1058_RS17800 at 333.126 kb on - strand, within HMPREF1058_RS17800 at 333.149 kb on + strand, within HMPREF1058_RS17800 at 333.296 kb on - strand, within HMPREF1058_RS17800 at 333.311 kb on - strand at 333.313 kb on + strand at 333.314 kb on - strand at 333.440 kb on - strand at 333.483 kb on + strand at 333.496 kb on + strand at 333.496 kb on + strand at 333.535 kb on + strand at 333.641 kb on - strand, within HMPREF1058_RS17795 at 333.743 kb on - strand, within HMPREF1058_RS17795 at 333.743 kb on - strand, within HMPREF1058_RS17795 at 333.905 kb on - strand, within HMPREF1058_RS17795 at 333.956 kb on + strand, within HMPREF1058_RS17795 at 333.957 kb on - strand, within HMPREF1058_RS17795 at 333.957 kb on - strand, within HMPREF1058_RS17795 at 333.958 kb on + strand, within HMPREF1058_RS17795 at 333.958 kb on + strand, within HMPREF1058_RS17795 at 333.958 kb on + strand, within HMPREF1058_RS17795 at 333.964 kb on + strand, within HMPREF1058_RS17795 at 333.964 kb on + strand, within HMPREF1058_RS17795 at 333.965 kb on - strand, within HMPREF1058_RS17795 at 333.965 kb on - strand, within HMPREF1058_RS17795 at 334.133 kb on - strand, within HMPREF1058_RS17795 at 334.209 kb on - strand, within HMPREF1058_RS17795 at 334.213 kb on - strand, within HMPREF1058_RS17795 at 334.300 kb on + strand, within HMPREF1058_RS17795 at 334.498 kb on + strand, within HMPREF1058_RS17795 at 334.499 kb on - strand, within HMPREF1058_RS17795 at 334.503 kb on + strand, within HMPREF1058_RS17795 at 334.524 kb on + strand, within HMPREF1058_RS17795 at 334.543 kb on + strand, within HMPREF1058_RS17795 at 334.543 kb on + strand, within HMPREF1058_RS17795 at 334.564 kb on - strand, within HMPREF1058_RS17795 at 334.564 kb on - strand, within HMPREF1058_RS17795 at 334.588 kb on - strand, within HMPREF1058_RS17795 at 334.626 kb on + strand, within HMPREF1058_RS17795 at 334.674 kb on + strand, within HMPREF1058_RS17795 at 334.752 kb on + strand at 334.771 kb on + strand at 334.777 kb on + strand at 334.777 kb on + strand at 334.962 kb on + strand at 334.963 kb on - strand at 335.174 kb on + strand, within HMPREF1058_RS17790 at 335.175 kb on - strand, within HMPREF1058_RS17790 at 335.175 kb on - strand, within HMPREF1058_RS17790 at 335.217 kb on - strand, within HMPREF1058_RS17790 at 335.239 kb on + strand, within HMPREF1058_RS17790 at 335.268 kb on - strand, within HMPREF1058_RS17790 at 335.466 kb on + strand, within HMPREF1058_RS17790 at 335.474 kb on + strand, within HMPREF1058_RS17790 at 335.486 kb on + strand, within HMPREF1058_RS17790 at 335.607 kb on + strand, within HMPREF1058_RS17790 at 335.607 kb on + strand, within HMPREF1058_RS17790 at 335.685 kb on - strand, within HMPREF1058_RS17790 at 335.704 kb on + strand, within HMPREF1058_RS17790 at 335.763 kb on - strand, within HMPREF1058_RS17790 at 335.801 kb on + strand, within HMPREF1058_RS17790
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 332,513 + HMPREF1058_RS17800 0.31 -0.1 332,513 + HMPREF1058_RS17800 0.31 +1.3 332,513 + HMPREF1058_RS17800 0.31 -0.2 332,514 - HMPREF1058_RS17800 0.31 +0.7 332,516 - HMPREF1058_RS17800 0.31 -1.4 332,538 + HMPREF1058_RS17800 0.33 -1.9 332,538 + HMPREF1058_RS17800 0.33 -0.1 332,539 - HMPREF1058_RS17800 0.33 -0.4 332,543 - HMPREF1058_RS17800 0.33 +1.5 332,562 - HMPREF1058_RS17800 0.35 -0.7 332,631 - HMPREF1058_RS17800 0.40 -0.7 332,756 + HMPREF1058_RS17800 0.49 +1.8 332,823 - HMPREF1058_RS17800 0.54 +1.5 332,867 + HMPREF1058_RS17800 0.57 -1.7 333,000 + HMPREF1058_RS17800 0.67 -0.4 333,003 - HMPREF1058_RS17800 0.67 -0.7 333,049 - HMPREF1058_RS17800 0.71 -0.1 333,126 - HMPREF1058_RS17800 0.76 -3.8 333,126 - HMPREF1058_RS17800 0.76 +2.2 333,149 + HMPREF1058_RS17800 0.78 -1.1 333,296 - HMPREF1058_RS17800 0.89 +2.6 333,311 - -1.1 333,313 + -0.1 333,314 - +1.8 333,440 - -2.2 333,483 + -1.1 333,496 + +1.1 333,496 + +2.1 333,535 + -2.7 333,641 - HMPREF1058_RS17795 0.14 -2.7 333,743 - HMPREF1058_RS17795 0.21 -0.1 333,743 - HMPREF1058_RS17795 0.21 -0.9 333,905 - HMPREF1058_RS17795 0.32 -1.4 333,956 + HMPREF1058_RS17795 0.36 +2.7 333,957 - HMPREF1058_RS17795 0.36 -0.8 333,957 - HMPREF1058_RS17795 0.36 -1.1 333,958 + HMPREF1058_RS17795 0.36 +0.7 333,958 + HMPREF1058_RS17795 0.36 +0.9 333,958 + HMPREF1058_RS17795 0.36 +0.5 333,964 + HMPREF1058_RS17795 0.36 +0.9 333,964 + HMPREF1058_RS17795 0.36 +0.2 333,965 - HMPREF1058_RS17795 0.36 +1.5 333,965 - HMPREF1058_RS17795 0.36 -2.4 334,133 - HMPREF1058_RS17795 0.48 +0.6 334,209 - HMPREF1058_RS17795 0.53 +1.4 334,213 - HMPREF1058_RS17795 0.53 -0.4 334,300 + HMPREF1058_RS17795 0.59 +0.5 334,498 + HMPREF1058_RS17795 0.73 +0.8 334,499 - HMPREF1058_RS17795 0.73 -1.2 334,503 + HMPREF1058_RS17795 0.73 +2.8 334,524 + HMPREF1058_RS17795 0.75 -2.7 334,543 + HMPREF1058_RS17795 0.76 -0.1 334,543 + HMPREF1058_RS17795 0.76 +0.7 334,564 - HMPREF1058_RS17795 0.78 +2.9 334,564 - HMPREF1058_RS17795 0.78 -0.7 334,588 - HMPREF1058_RS17795 0.79 +0.8 334,626 + HMPREF1058_RS17795 0.82 +1.0 334,674 + HMPREF1058_RS17795 0.85 +3.4 334,752 + -0.5 334,771 + -0.4 334,777 + -0.8 334,777 + -0.3 334,962 + -1.1 334,963 - -0.0 335,174 + HMPREF1058_RS17790 0.17 +2.1 335,175 - HMPREF1058_RS17790 0.17 +0.9 335,175 - HMPREF1058_RS17790 0.17 -1.1 335,217 - HMPREF1058_RS17790 0.20 -2.1 335,239 + HMPREF1058_RS17790 0.22 -3.4 335,268 - HMPREF1058_RS17790 0.24 -0.4 335,466 + HMPREF1058_RS17790 0.40 -0.8 335,474 + HMPREF1058_RS17790 0.41 -1.7 335,486 + HMPREF1058_RS17790 0.42 +1.1 335,607 + HMPREF1058_RS17790 0.51 -1.1 335,607 + HMPREF1058_RS17790 0.51 +0.9 335,685 - HMPREF1058_RS17790 0.57 +1.9 335,704 + HMPREF1058_RS17790 0.59 -0.1 335,763 - HMPREF1058_RS17790 0.64 -1.1 335,801 + HMPREF1058_RS17790 0.67 -0.0
Or see this region's nucleotide sequence