Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17745 and HMPREF1058_RS17740 are separated by 8 nucleotides HMPREF1058_RS17740 and HMPREF1058_RS17735 are separated by 56 nucleotides
HMPREF1058_RS17745: HMPREF1058_RS17745 - hypothetical protein, at 346,995 to 348,335
_RS17745
HMPREF1058_RS17740: HMPREF1058_RS17740 - glycoside hydrolase family 28 protein, at 348,344 to 349,684
_RS17740
HMPREF1058_RS17735: HMPREF1058_RS17735 - family 78 glycoside hydrolase catalytic domain, at 349,741 to 352,494
_RS17735
Position (kb) 348
349
350 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 347.544 kb on - strand, within HMPREF1058_RS17745 at 347.554 kb on - strand, within HMPREF1058_RS17745 at 347.675 kb on + strand, within HMPREF1058_RS17745 at 347.751 kb on - strand, within HMPREF1058_RS17745 at 347.786 kb on - strand, within HMPREF1058_RS17745 at 347.786 kb on - strand, within HMPREF1058_RS17745 at 347.786 kb on - strand, within HMPREF1058_RS17745 at 347.846 kb on - strand, within HMPREF1058_RS17745 at 347.863 kb on - strand, within HMPREF1058_RS17745 at 347.909 kb on + strand, within HMPREF1058_RS17745 at 347.909 kb on + strand, within HMPREF1058_RS17745 at 347.978 kb on + strand, within HMPREF1058_RS17745 at 347.986 kb on + strand, within HMPREF1058_RS17745 at 347.988 kb on + strand, within HMPREF1058_RS17745 at 348.062 kb on + strand, within HMPREF1058_RS17745 at 348.066 kb on + strand, within HMPREF1058_RS17745 at 348.067 kb on - strand, within HMPREF1058_RS17745 at 348.322 kb on - strand at 348.369 kb on + strand at 348.370 kb on - strand at 348.370 kb on - strand at 348.370 kb on - strand at 348.436 kb on - strand at 348.531 kb on + strand, within HMPREF1058_RS17740 at 348.535 kb on + strand, within HMPREF1058_RS17740 at 348.535 kb on + strand, within HMPREF1058_RS17740 at 348.536 kb on - strand, within HMPREF1058_RS17740 at 348.586 kb on + strand, within HMPREF1058_RS17740 at 348.589 kb on - strand, within HMPREF1058_RS17740 at 348.660 kb on - strand, within HMPREF1058_RS17740 at 348.738 kb on - strand, within HMPREF1058_RS17740 at 348.802 kb on + strand, within HMPREF1058_RS17740 at 348.920 kb on + strand, within HMPREF1058_RS17740 at 348.920 kb on + strand, within HMPREF1058_RS17740 at 348.921 kb on - strand, within HMPREF1058_RS17740 at 348.929 kb on - strand, within HMPREF1058_RS17740 at 348.983 kb on - strand, within HMPREF1058_RS17740 at 349.023 kb on - strand, within HMPREF1058_RS17740 at 349.068 kb on - strand, within HMPREF1058_RS17740 at 349.578 kb on - strand at 349.644 kb on - strand at 349.663 kb on + strand at 349.669 kb on + strand at 349.675 kb on + strand at 349.685 kb on + strand at 349.686 kb on - strand at 349.822 kb on + strand at 349.845 kb on + strand at 349.846 kb on - strand at 349.916 kb on + strand at 349.917 kb on + strand at 350.239 kb on + strand, within HMPREF1058_RS17735 at 350.275 kb on - strand, within HMPREF1058_RS17735 at 350.408 kb on + strand, within HMPREF1058_RS17735 at 350.423 kb on + strand, within HMPREF1058_RS17735 at 350.464 kb on + strand, within HMPREF1058_RS17735 at 350.465 kb on - strand, within HMPREF1058_RS17735 at 350.472 kb on + strand, within HMPREF1058_RS17735 at 350.472 kb on + strand, within HMPREF1058_RS17735 at 350.474 kb on + strand, within HMPREF1058_RS17735 at 350.487 kb on + strand, within HMPREF1058_RS17735 at 350.492 kb on - strand, within HMPREF1058_RS17735 at 350.508 kb on + strand, within HMPREF1058_RS17735 at 350.509 kb on - strand, within HMPREF1058_RS17735 at 350.546 kb on + strand, within HMPREF1058_RS17735 at 350.599 kb on - strand, within HMPREF1058_RS17735 at 350.600 kb on + strand, within HMPREF1058_RS17735 at 350.601 kb on - strand, within HMPREF1058_RS17735 at 350.628 kb on - strand, within HMPREF1058_RS17735 at 350.666 kb on + strand, within HMPREF1058_RS17735 at 350.666 kb on + strand, within HMPREF1058_RS17735 at 350.669 kb on + strand, within HMPREF1058_RS17735 at 350.683 kb on + strand, within HMPREF1058_RS17735
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 347,544 - HMPREF1058_RS17745 0.41 -0.7 347,554 - HMPREF1058_RS17745 0.42 -1.3 347,675 + HMPREF1058_RS17745 0.51 -0.7 347,751 - HMPREF1058_RS17745 0.56 -1.4 347,786 - HMPREF1058_RS17745 0.59 +0.5 347,786 - HMPREF1058_RS17745 0.59 -2.2 347,786 - HMPREF1058_RS17745 0.59 -1.1 347,846 - HMPREF1058_RS17745 0.63 -2.4 347,863 - HMPREF1058_RS17745 0.65 +0.2 347,909 + HMPREF1058_RS17745 0.68 -1.0 347,909 + HMPREF1058_RS17745 0.68 +0.9 347,978 + HMPREF1058_RS17745 0.73 +0.9 347,986 + HMPREF1058_RS17745 0.74 +1.1 347,988 + HMPREF1058_RS17745 0.74 -1.9 348,062 + HMPREF1058_RS17745 0.80 +4.6 348,066 + HMPREF1058_RS17745 0.80 -1.1 348,067 - HMPREF1058_RS17745 0.80 -1.5 348,322 - -0.5 348,369 + +0.5 348,370 - +1.2 348,370 - -0.5 348,370 - -2.1 348,436 - -2.3 348,531 + HMPREF1058_RS17740 0.14 -1.7 348,535 + HMPREF1058_RS17740 0.14 -0.1 348,535 + HMPREF1058_RS17740 0.14 +0.9 348,536 - HMPREF1058_RS17740 0.14 +2.6 348,586 + HMPREF1058_RS17740 0.18 +0.3 348,589 - HMPREF1058_RS17740 0.18 -0.8 348,660 - HMPREF1058_RS17740 0.24 -4.6 348,738 - HMPREF1058_RS17740 0.29 -0.4 348,802 + HMPREF1058_RS17740 0.34 -0.6 348,920 + HMPREF1058_RS17740 0.43 -0.1 348,920 + HMPREF1058_RS17740 0.43 -2.1 348,921 - HMPREF1058_RS17740 0.43 -2.1 348,929 - HMPREF1058_RS17740 0.44 -2.1 348,983 - HMPREF1058_RS17740 0.48 -0.4 349,023 - HMPREF1058_RS17740 0.51 -0.8 349,068 - HMPREF1058_RS17740 0.54 -1.7 349,578 - -3.4 349,644 - +1.6 349,663 + +0.5 349,669 + +1.8 349,675 + -0.1 349,685 + +3.2 349,686 - +1.0 349,822 + -2.1 349,845 + +4.3 349,846 - -0.9 349,916 + -0.7 349,917 + -0.9 350,239 + HMPREF1058_RS17735 0.18 -1.1 350,275 - HMPREF1058_RS17735 0.19 -1.0 350,408 + HMPREF1058_RS17735 0.24 -0.1 350,423 + HMPREF1058_RS17735 0.25 +2.9 350,464 + HMPREF1058_RS17735 0.26 +2.4 350,465 - HMPREF1058_RS17735 0.26 -0.1 350,472 + HMPREF1058_RS17735 0.27 -0.4 350,472 + HMPREF1058_RS17735 0.27 -0.7 350,474 + HMPREF1058_RS17735 0.27 -0.1 350,487 + HMPREF1058_RS17735 0.27 +0.0 350,492 - HMPREF1058_RS17735 0.27 -4.1 350,508 + HMPREF1058_RS17735 0.28 +0.2 350,509 - HMPREF1058_RS17735 0.28 -1.7 350,546 + HMPREF1058_RS17735 0.29 -1.1 350,599 - HMPREF1058_RS17735 0.31 -3.3 350,600 + HMPREF1058_RS17735 0.31 -1.1 350,601 - HMPREF1058_RS17735 0.31 +6.4 350,628 - HMPREF1058_RS17735 0.32 -0.5 350,666 + HMPREF1058_RS17735 0.34 +0.1 350,666 + HMPREF1058_RS17735 0.34 +0.7 350,669 + HMPREF1058_RS17735 0.34 -1.9 350,683 + HMPREF1058_RS17735 0.34 +0.4
Or see this region's nucleotide sequence