Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17345

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS17350 and HMPREF1058_RS17345 overlap by 38 nucleotidesHMPREF1058_RS17345 and HMPREF1058_RS17340 overlap by 11 nucleotides HMPREF1058_RS17350: HMPREF1058_RS17350 - hypothetical protein, at 464,028 to 465,281 _RS17350 HMPREF1058_RS17345: HMPREF1058_RS17345 - CatB-related O-acetyltransferase, at 465,244 to 465,906 _RS17345 HMPREF1058_RS17340: HMPREF1058_RS17340 - glycosyltransferase, at 465,896 to 466,999 _RS17340 Position (kb) 465 466Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 464.250 kb on - strand, within HMPREF1058_RS17350at 464.255 kb on - strand, within HMPREF1058_RS17350at 464.255 kb on - strand, within HMPREF1058_RS17350at 464.256 kb on + strand, within HMPREF1058_RS17350at 464.261 kb on - strand, within HMPREF1058_RS17350at 464.261 kb on - strand, within HMPREF1058_RS17350at 464.276 kb on + strand, within HMPREF1058_RS17350at 464.318 kb on - strand, within HMPREF1058_RS17350at 464.362 kb on - strand, within HMPREF1058_RS17350at 464.405 kb on - strand, within HMPREF1058_RS17350at 464.405 kb on - strand, within HMPREF1058_RS17350at 464.408 kb on - strand, within HMPREF1058_RS17350at 464.408 kb on - strand, within HMPREF1058_RS17350at 464.413 kb on + strand, within HMPREF1058_RS17350at 464.413 kb on + strand, within HMPREF1058_RS17350at 464.435 kb on + strand, within HMPREF1058_RS17350at 464.436 kb on - strand, within HMPREF1058_RS17350at 464.436 kb on - strand, within HMPREF1058_RS17350at 464.436 kb on - strand, within HMPREF1058_RS17350at 464.440 kb on - strand, within HMPREF1058_RS17350at 464.447 kb on + strand, within HMPREF1058_RS17350at 464.447 kb on + strand, within HMPREF1058_RS17350at 464.447 kb on + strand, within HMPREF1058_RS17350at 464.448 kb on - strand, within HMPREF1058_RS17350at 464.448 kb on - strand, within HMPREF1058_RS17350at 464.448 kb on - strand, within HMPREF1058_RS17350at 464.448 kb on - strand, within HMPREF1058_RS17350at 464.483 kb on + strand, within HMPREF1058_RS17350at 464.489 kb on + strand, within HMPREF1058_RS17350at 464.490 kb on - strand, within HMPREF1058_RS17350at 464.491 kb on + strand, within HMPREF1058_RS17350at 464.492 kb on - strand, within HMPREF1058_RS17350at 464.501 kb on - strand, within HMPREF1058_RS17350at 464.595 kb on - strand, within HMPREF1058_RS17350at 464.603 kb on + strand, within HMPREF1058_RS17350at 464.603 kb on + strand, within HMPREF1058_RS17350at 464.603 kb on + strand, within HMPREF1058_RS17350at 464.603 kb on + strand, within HMPREF1058_RS17350at 464.604 kb on - strand, within HMPREF1058_RS17350at 464.604 kb on - strand, within HMPREF1058_RS17350at 464.648 kb on + strand, within HMPREF1058_RS17350at 464.691 kb on - strand, within HMPREF1058_RS17350at 464.692 kb on + strand, within HMPREF1058_RS17350at 464.693 kb on - strand, within HMPREF1058_RS17350at 464.693 kb on - strand, within HMPREF1058_RS17350at 464.720 kb on + strand, within HMPREF1058_RS17350at 464.734 kb on + strand, within HMPREF1058_RS17350at 464.867 kb on - strand, within HMPREF1058_RS17350at 464.896 kb on - strand, within HMPREF1058_RS17350at 464.960 kb on + strand, within HMPREF1058_RS17350at 464.961 kb on - strand, within HMPREF1058_RS17350at 465.047 kb on + strand, within HMPREF1058_RS17350at 465.047 kb on + strand, within HMPREF1058_RS17350at 465.048 kb on - strand, within HMPREF1058_RS17350at 465.064 kb on + strand, within HMPREF1058_RS17350at 465.091 kb on + strand, within HMPREF1058_RS17350at 465.092 kb on - strand, within HMPREF1058_RS17350at 465.104 kb on + strand, within HMPREF1058_RS17350at 465.107 kb on - strand, within HMPREF1058_RS17350at 465.121 kb on + strand, within HMPREF1058_RS17350at 465.122 kb on - strand, within HMPREF1058_RS17350at 465.178 kb on - strandat 465.206 kb on + strandat 465.216 kb on - strandat 465.243 kb on + strandat 465.252 kb on - strandat 465.252 kb on - strandat 465.258 kb on - strandat 465.280 kb on - strandat 465.286 kb on - strandat 465.297 kb on + strandat 465.297 kb on + strandat 465.386 kb on + strand, within HMPREF1058_RS17345at 465.387 kb on - strand, within HMPREF1058_RS17345at 465.401 kb on - strand, within HMPREF1058_RS17345at 465.401 kb on - strand, within HMPREF1058_RS17345at 465.402 kb on + strand, within HMPREF1058_RS17345at 465.403 kb on - strand, within HMPREF1058_RS17345at 465.406 kb on - strand, within HMPREF1058_RS17345at 465.455 kb on + strand, within HMPREF1058_RS17345at 465.499 kb on + strand, within HMPREF1058_RS17345at 465.500 kb on - strand, within HMPREF1058_RS17345at 465.510 kb on - strand, within HMPREF1058_RS17345at 465.530 kb on - strand, within HMPREF1058_RS17345at 465.564 kb on - strand, within HMPREF1058_RS17345at 465.573 kb on + strand, within HMPREF1058_RS17345at 465.708 kb on - strand, within HMPREF1058_RS17345at 465.708 kb on - strand, within HMPREF1058_RS17345at 465.708 kb on - strand, within HMPREF1058_RS17345at 465.740 kb on + strand, within HMPREF1058_RS17345at 465.791 kb on + strand, within HMPREF1058_RS17345at 465.792 kb on - strand, within HMPREF1058_RS17345at 465.804 kb on - strand, within HMPREF1058_RS17345at 465.841 kb on - strandat 465.860 kb on + strandat 465.861 kb on - strandat 465.913 kb on + strandat 465.914 kb on - strandat 465.915 kb on + strandat 465.958 kb on - strandat 465.958 kb on - strandat 465.991 kb on - strandat 466.095 kb on + strand, within HMPREF1058_RS17340at 466.096 kb on - strand, within HMPREF1058_RS17340at 466.105 kb on - strand, within HMPREF1058_RS17340at 466.142 kb on - strand, within HMPREF1058_RS17340at 466.163 kb on + strand, within HMPREF1058_RS17340at 466.171 kb on + strand, within HMPREF1058_RS17340at 466.177 kb on - strand, within HMPREF1058_RS17340at 466.245 kb on + strand, within HMPREF1058_RS17340at 466.246 kb on - strandat 466.246 kb on - strand, within HMPREF1058_RS17340at 466.247 kb on + strand, within HMPREF1058_RS17340at 466.290 kb on - strand, within HMPREF1058_RS17340at 466.310 kb on - strand, within HMPREF1058_RS17340at 466.310 kb on - strand, within HMPREF1058_RS17340at 466.352 kb on - strand, within HMPREF1058_RS17340at 466.494 kb on + strand, within HMPREF1058_RS17340at 466.494 kb on + strand, within HMPREF1058_RS17340at 466.524 kb on + strand, within HMPREF1058_RS17340at 466.524 kb on + strand, within HMPREF1058_RS17340at 466.525 kb on - strand, within HMPREF1058_RS17340at 466.634 kb on + strand, within HMPREF1058_RS17340at 466.721 kb on - strand, within HMPREF1058_RS17340at 466.726 kb on - strand, within HMPREF1058_RS17340at 466.765 kb on - strand, within HMPREF1058_RS17340at 466.795 kb on - strand, within HMPREF1058_RS17340at 466.827 kb on + strand, within HMPREF1058_RS17340at 466.900 kb on + strandat 466.900 kb on + strandat 466.901 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
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464,250 - HMPREF1058_RS17350 0.18 -1.6
464,255 - HMPREF1058_RS17350 0.18 +3.5
464,255 - HMPREF1058_RS17350 0.18 -1.0
464,256 + HMPREF1058_RS17350 0.18 +1.0
464,261 - HMPREF1058_RS17350 0.19 +1.0
464,261 - HMPREF1058_RS17350 0.19 +1.7
464,276 + HMPREF1058_RS17350 0.20 -1.1
464,318 - HMPREF1058_RS17350 0.23 -0.1
464,362 - HMPREF1058_RS17350 0.27 +1.0
464,405 - HMPREF1058_RS17350 0.30 +0.0
464,405 - HMPREF1058_RS17350 0.30 +0.0
464,408 - HMPREF1058_RS17350 0.30 -1.6
464,408 - HMPREF1058_RS17350 0.30 +0.0
464,413 + HMPREF1058_RS17350 0.31 +0.3
464,413 + HMPREF1058_RS17350 0.31 +0.0
464,435 + HMPREF1058_RS17350 0.32 -2.6
464,436 - HMPREF1058_RS17350 0.33 +0.8
464,436 - HMPREF1058_RS17350 0.33 -1.0
464,436 - HMPREF1058_RS17350 0.33 -1.0
464,440 - HMPREF1058_RS17350 0.33 -1.4
464,447 + HMPREF1058_RS17350 0.33 +0.0
464,447 + HMPREF1058_RS17350 0.33 +1.3
464,447 + HMPREF1058_RS17350 0.33 +2.9
464,448 - HMPREF1058_RS17350 0.33 -0.9
464,448 - HMPREF1058_RS17350 0.33 +0.4
464,448 - HMPREF1058_RS17350 0.33 -1.3
464,448 - HMPREF1058_RS17350 0.33 +0.8
464,483 + HMPREF1058_RS17350 0.36 +1.2
464,489 + HMPREF1058_RS17350 0.37 -0.5
464,490 - HMPREF1058_RS17350 0.37 -0.7
464,491 + HMPREF1058_RS17350 0.37 +0.3
464,492 - HMPREF1058_RS17350 0.37 -1.9
464,501 - HMPREF1058_RS17350 0.38 -0.2
464,595 - HMPREF1058_RS17350 0.45 +0.7
464,603 + HMPREF1058_RS17350 0.46 -2.3
464,603 + HMPREF1058_RS17350 0.46 +0.0
464,603 + HMPREF1058_RS17350 0.46 +0.3
464,603 + HMPREF1058_RS17350 0.46 +1.0
464,604 - HMPREF1058_RS17350 0.46 -1.1
464,604 - HMPREF1058_RS17350 0.46 +0.3
464,648 + HMPREF1058_RS17350 0.49 -0.1
464,691 - HMPREF1058_RS17350 0.53 +0.8
464,692 + HMPREF1058_RS17350 0.53 -1.5
464,693 - HMPREF1058_RS17350 0.53 -0.2
464,693 - HMPREF1058_RS17350 0.53 +0.8
464,720 + HMPREF1058_RS17350 0.55 +0.0
464,734 + HMPREF1058_RS17350 0.56 +0.3
464,867 - HMPREF1058_RS17350 0.67 +1.9
464,896 - HMPREF1058_RS17350 0.69 -2.3
464,960 + HMPREF1058_RS17350 0.74 +0.4
464,961 - HMPREF1058_RS17350 0.74 +2.1
465,047 + HMPREF1058_RS17350 0.81 -2.2
465,047 + HMPREF1058_RS17350 0.81 -2.6
465,048 - HMPREF1058_RS17350 0.81 -0.5
465,064 + HMPREF1058_RS17350 0.83 -0.3
465,091 + HMPREF1058_RS17350 0.85 +0.5
465,092 - HMPREF1058_RS17350 0.85 -1.6
465,104 + HMPREF1058_RS17350 0.86 -0.7
465,107 - HMPREF1058_RS17350 0.86 -1.6
465,121 + HMPREF1058_RS17350 0.87 +0.1
465,122 - HMPREF1058_RS17350 0.87 +1.4
465,178 - +0.1
465,206 + -0.6
465,216 - +1.2
465,243 + +0.9
465,252 - -1.4
465,252 - +1.6
465,258 - +1.0
465,280 - -2.3
465,286 - +1.0
465,297 + +0.3
465,297 + -0.2
465,386 + HMPREF1058_RS17345 0.21 +0.3
465,387 - HMPREF1058_RS17345 0.22 +0.6
465,401 - HMPREF1058_RS17345 0.24 +3.2
465,401 - HMPREF1058_RS17345 0.24 +0.3
465,402 + HMPREF1058_RS17345 0.24 -0.7
465,403 - HMPREF1058_RS17345 0.24 +3.2
465,406 - HMPREF1058_RS17345 0.24 +0.0
465,455 + HMPREF1058_RS17345 0.32 +0.4
465,499 + HMPREF1058_RS17345 0.38 -0.5
465,500 - HMPREF1058_RS17345 0.39 +2.8
465,510 - HMPREF1058_RS17345 0.40 +0.0
465,530 - HMPREF1058_RS17345 0.43 +0.9
465,564 - HMPREF1058_RS17345 0.48 -1.2
465,573 + HMPREF1058_RS17345 0.50 +0.0
465,708 - HMPREF1058_RS17345 0.70 +0.0
465,708 - HMPREF1058_RS17345 0.70 +1.6
465,708 - HMPREF1058_RS17345 0.70 +0.5
465,740 + HMPREF1058_RS17345 0.75 -0.7
465,791 + HMPREF1058_RS17345 0.83 -2.0
465,792 - HMPREF1058_RS17345 0.83 +3.4
465,804 - HMPREF1058_RS17345 0.84 -1.6
465,841 - +0.6
465,860 + -0.7
465,861 - +0.6
465,913 + +1.9
465,914 - +0.3
465,915 + +4.2
465,958 - +0.8
465,958 - -0.2
465,991 - -2.6
466,095 + HMPREF1058_RS17340 0.18 +0.0
466,096 - HMPREF1058_RS17340 0.18 +0.0
466,105 - HMPREF1058_RS17340 0.19 +0.3
466,142 - HMPREF1058_RS17340 0.22 +0.0
466,163 + HMPREF1058_RS17340 0.24 -1.4
466,171 + HMPREF1058_RS17340 0.25 +1.6
466,177 - HMPREF1058_RS17340 0.25 -1.6
466,245 + HMPREF1058_RS17340 0.32 +0.1
466,246 - +2.0
466,246 - HMPREF1058_RS17340 0.32 +0.8
466,247 + HMPREF1058_RS17340 0.32 -1.1
466,290 - HMPREF1058_RS17340 0.36 -3.3
466,310 - HMPREF1058_RS17340 0.38 -2.6
466,310 - HMPREF1058_RS17340 0.38 +0.0
466,352 - HMPREF1058_RS17340 0.41 +1.6
466,494 + HMPREF1058_RS17340 0.54 -1.3
466,494 + HMPREF1058_RS17340 0.54 -1.6
466,524 + HMPREF1058_RS17340 0.57 +0.0
466,524 + HMPREF1058_RS17340 0.57 -2.0
466,525 - HMPREF1058_RS17340 0.57 +1.3
466,634 + HMPREF1058_RS17340 0.67 +0.4
466,721 - HMPREF1058_RS17340 0.75 +1.6
466,726 - HMPREF1058_RS17340 0.75 -2.6
466,765 - HMPREF1058_RS17340 0.79 -1.9
466,795 - HMPREF1058_RS17340 0.81 +1.0
466,827 + HMPREF1058_RS17340 0.84 -1.0
466,900 + +1.0
466,900 + +2.0
466,901 - +0.6

Or see this region's nucleotide sequence