Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17250 and HMPREF1058_RS17245 are separated by 225 nucleotides HMPREF1058_RS17245 and HMPREF1058_RS17240 are separated by 5 nucleotides
HMPREF1058_RS17250: HMPREF1058_RS17250 - glycoside hydrolase family 127 protein, at 485,688 to 487,793
_RS17250
HMPREF1058_RS17245: HMPREF1058_RS17245 - family 78 glycoside hydrolase catalytic domain, at 488,019 to 491,993
_RS17245
HMPREF1058_RS17240: HMPREF1058_RS17240 - DUF4038 domain-containing protein, at 491,999 to 493,468
_RS17240
Position (kb) 488
489
490
491
492 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 487.064 kb on + strand, within HMPREF1058_RS17250 at 487.064 kb on + strand, within HMPREF1058_RS17250 at 487.066 kb on + strand, within HMPREF1058_RS17250 at 487.225 kb on + strand, within HMPREF1058_RS17250 at 487.424 kb on + strand, within HMPREF1058_RS17250 at 487.483 kb on + strand, within HMPREF1058_RS17250 at 487.483 kb on + strand, within HMPREF1058_RS17250 at 487.483 kb on + strand, within HMPREF1058_RS17250 at 487.483 kb on + strand, within HMPREF1058_RS17250 at 487.488 kb on - strand, within HMPREF1058_RS17250 at 487.488 kb on - strand, within HMPREF1058_RS17250 at 487.598 kb on + strand at 487.598 kb on + strand at 487.599 kb on - strand at 487.619 kb on + strand at 487.619 kb on + strand at 487.623 kb on + strand at 487.623 kb on + strand at 487.624 kb on - strand at 487.624 kb on - strand at 487.624 kb on - strand at 487.776 kb on + strand at 487.777 kb on - strand at 487.782 kb on - strand at 487.808 kb on + strand at 487.853 kb on - strand at 487.858 kb on - strand at 487.863 kb on + strand at 487.867 kb on + strand at 488.048 kb on + strand at 488.077 kb on + strand at 488.078 kb on - strand at 488.079 kb on + strand at 488.080 kb on - strand at 488.211 kb on - strand at 488.262 kb on + strand at 488.404 kb on - strand at 488.452 kb on + strand, within HMPREF1058_RS17245 at 488.453 kb on - strand, within HMPREF1058_RS17245 at 488.453 kb on - strand, within HMPREF1058_RS17245 at 488.453 kb on - strand, within HMPREF1058_RS17245 at 488.457 kb on - strand, within HMPREF1058_RS17245 at 488.892 kb on - strand, within HMPREF1058_RS17245 at 489.042 kb on - strand, within HMPREF1058_RS17245 at 489.117 kb on - strand, within HMPREF1058_RS17245 at 489.177 kb on - strand, within HMPREF1058_RS17245 at 489.242 kb on + strand, within HMPREF1058_RS17245 at 489.412 kb on + strand, within HMPREF1058_RS17245 at 489.414 kb on + strand, within HMPREF1058_RS17245 at 489.414 kb on + strand, within HMPREF1058_RS17245 at 489.415 kb on - strand, within HMPREF1058_RS17245 at 489.507 kb on - strand, within HMPREF1058_RS17245 at 489.507 kb on - strand, within HMPREF1058_RS17245 at 489.529 kb on + strand, within HMPREF1058_RS17245 at 489.540 kb on + strand, within HMPREF1058_RS17245 at 489.541 kb on - strand, within HMPREF1058_RS17245 at 489.624 kb on - strand, within HMPREF1058_RS17245 at 489.643 kb on + strand, within HMPREF1058_RS17245 at 489.734 kb on + strand, within HMPREF1058_RS17245 at 489.738 kb on + strand, within HMPREF1058_RS17245 at 489.867 kb on - strand, within HMPREF1058_RS17245 at 489.877 kb on + strand, within HMPREF1058_RS17245 at 489.877 kb on + strand, within HMPREF1058_RS17245 at 490.055 kb on + strand, within HMPREF1058_RS17245 at 490.056 kb on - strand, within HMPREF1058_RS17245 at 490.057 kb on + strand, within HMPREF1058_RS17245 at 490.058 kb on - strand, within HMPREF1058_RS17245 at 490.064 kb on - strand, within HMPREF1058_RS17245 at 490.143 kb on - strand, within HMPREF1058_RS17245 at 490.143 kb on - strand, within HMPREF1058_RS17245 at 490.203 kb on + strand, within HMPREF1058_RS17245 at 490.204 kb on - strand, within HMPREF1058_RS17245 at 490.204 kb on - strand, within HMPREF1058_RS17245 at 490.325 kb on + strand, within HMPREF1058_RS17245 at 490.330 kb on + strand, within HMPREF1058_RS17245 at 490.352 kb on + strand, within HMPREF1058_RS17245 at 490.522 kb on + strand, within HMPREF1058_RS17245 at 490.522 kb on + strand, within HMPREF1058_RS17245 at 490.523 kb on - strand, within HMPREF1058_RS17245 at 490.571 kb on + strand, within HMPREF1058_RS17245 at 490.599 kb on - strand, within HMPREF1058_RS17245 at 490.616 kb on - strand, within HMPREF1058_RS17245 at 490.616 kb on - strand, within HMPREF1058_RS17245 at 490.617 kb on + strand, within HMPREF1058_RS17245 at 490.656 kb on - strand, within HMPREF1058_RS17245 at 490.672 kb on - strand, within HMPREF1058_RS17245 at 490.676 kb on - strand, within HMPREF1058_RS17245 at 490.739 kb on + strand, within HMPREF1058_RS17245 at 490.742 kb on - strand, within HMPREF1058_RS17245 at 490.859 kb on + strand, within HMPREF1058_RS17245 at 490.862 kb on + strand, within HMPREF1058_RS17245 at 490.863 kb on - strand, within HMPREF1058_RS17245 at 490.901 kb on + strand, within HMPREF1058_RS17245 at 490.902 kb on - strand, within HMPREF1058_RS17245 at 490.903 kb on + strand, within HMPREF1058_RS17245 at 490.985 kb on + strand, within HMPREF1058_RS17245 at 491.077 kb on + strand, within HMPREF1058_RS17245 at 491.105 kb on + strand, within HMPREF1058_RS17245 at 491.106 kb on - strand, within HMPREF1058_RS17245 at 491.110 kb on - strand, within HMPREF1058_RS17245 at 491.181 kb on + strand, within HMPREF1058_RS17245 at 491.182 kb on - strand, within HMPREF1058_RS17245 at 491.183 kb on + strand, within HMPREF1058_RS17245 at 491.229 kb on - strand, within HMPREF1058_RS17245 at 491.257 kb on + strand at 491.423 kb on - strand, within HMPREF1058_RS17245 at 491.455 kb on + strand, within HMPREF1058_RS17245 at 491.455 kb on + strand, within HMPREF1058_RS17245 at 491.559 kb on + strand, within HMPREF1058_RS17245 at 491.589 kb on + strand, within HMPREF1058_RS17245 at 491.590 kb on - strand, within HMPREF1058_RS17245 at 491.967 kb on + strand at 491.970 kb on + strand at 491.994 kb on - strand at 492.001 kb on - strand at 492.157 kb on - strand, within HMPREF1058_RS17240 at 492.184 kb on - strand, within HMPREF1058_RS17240 at 492.235 kb on + strand, within HMPREF1058_RS17240 at 492.384 kb on + strand, within HMPREF1058_RS17240 at 492.491 kb on - strand, within HMPREF1058_RS17240 at 492.547 kb on - strand, within HMPREF1058_RS17240 at 492.619 kb on + strand, within HMPREF1058_RS17240 at 492.815 kb on - strand, within HMPREF1058_RS17240 at 492.815 kb on - strand, within HMPREF1058_RS17240 at 492.899 kb on - strand, within HMPREF1058_RS17240 at 492.901 kb on + strand, within HMPREF1058_RS17240 at 492.923 kb on + strand, within HMPREF1058_RS17240 at 492.923 kb on + strand, within HMPREF1058_RS17240 at 492.935 kb on - strand, within HMPREF1058_RS17240
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 487,064 + HMPREF1058_RS17250 0.65 -0.6 487,064 + HMPREF1058_RS17250 0.65 -2.6 487,066 + HMPREF1058_RS17250 0.65 +0.4 487,225 + HMPREF1058_RS17250 0.73 +1.6 487,424 + HMPREF1058_RS17250 0.82 -1.6 487,483 + HMPREF1058_RS17250 0.85 +0.1 487,483 + HMPREF1058_RS17250 0.85 +2.4 487,483 + HMPREF1058_RS17250 0.85 +0.4 487,483 + HMPREF1058_RS17250 0.85 -1.0 487,488 - HMPREF1058_RS17250 0.85 -2.8 487,488 - HMPREF1058_RS17250 0.85 -2.0 487,598 + -1.0 487,598 + -2.6 487,599 - -2.6 487,619 + -1.6 487,619 + +1.4 487,623 + -0.4 487,623 + +0.8 487,624 - -0.6 487,624 - -2.9 487,624 - -2.0 487,776 + -1.0 487,777 - -1.1 487,782 - -0.6 487,808 + -1.0 487,853 - +1.0 487,858 - -0.6 487,863 + +2.0 487,867 + -0.5 488,048 + -1.6 488,077 + -0.6 488,078 - +0.0 488,079 + -0.6 488,080 - +0.2 488,211 - +0.5 488,262 + +0.5 488,404 - +1.0 488,452 + HMPREF1058_RS17245 0.11 -2.1 488,453 - HMPREF1058_RS17245 0.11 +0.0 488,453 - HMPREF1058_RS17245 0.11 -0.5 488,453 - HMPREF1058_RS17245 0.11 -2.8 488,457 - HMPREF1058_RS17245 0.11 -1.6 488,892 - HMPREF1058_RS17245 0.22 +0.0 489,042 - HMPREF1058_RS17245 0.26 +0.7 489,117 - HMPREF1058_RS17245 0.28 +0.7 489,177 - HMPREF1058_RS17245 0.29 -1.2 489,242 + HMPREF1058_RS17245 0.31 -1.8 489,412 + HMPREF1058_RS17245 0.35 -1.6 489,414 + HMPREF1058_RS17245 0.35 +0.9 489,414 + HMPREF1058_RS17245 0.35 +0.0 489,415 - HMPREF1058_RS17245 0.35 -0.4 489,507 - HMPREF1058_RS17245 0.37 -0.8 489,507 - HMPREF1058_RS17245 0.37 +1.3 489,529 + HMPREF1058_RS17245 0.38 -1.2 489,540 + HMPREF1058_RS17245 0.38 -2.0 489,541 - HMPREF1058_RS17245 0.38 -1.6 489,624 - HMPREF1058_RS17245 0.40 -1.0 489,643 + HMPREF1058_RS17245 0.41 +2.7 489,734 + HMPREF1058_RS17245 0.43 -1.4 489,738 + HMPREF1058_RS17245 0.43 +0.4 489,867 - HMPREF1058_RS17245 0.46 +0.6 489,877 + HMPREF1058_RS17245 0.47 -2.9 489,877 + HMPREF1058_RS17245 0.47 +0.0 490,055 + HMPREF1058_RS17245 0.51 +1.3 490,056 - HMPREF1058_RS17245 0.51 -0.3 490,057 + HMPREF1058_RS17245 0.51 +0.8 490,058 - HMPREF1058_RS17245 0.51 -0.0 490,064 - HMPREF1058_RS17245 0.51 -0.4 490,143 - HMPREF1058_RS17245 0.53 +1.9 490,143 - HMPREF1058_RS17245 0.53 -1.3 490,203 + HMPREF1058_RS17245 0.55 +1.3 490,204 - HMPREF1058_RS17245 0.55 +1.8 490,204 - HMPREF1058_RS17245 0.55 -1.0 490,325 + HMPREF1058_RS17245 0.58 -1.0 490,330 + HMPREF1058_RS17245 0.58 +0.0 490,352 + HMPREF1058_RS17245 0.59 -0.2 490,522 + HMPREF1058_RS17245 0.63 -2.8 490,522 + HMPREF1058_RS17245 0.63 +0.0 490,523 - HMPREF1058_RS17245 0.63 +0.3 490,571 + HMPREF1058_RS17245 0.64 -0.6 490,599 - HMPREF1058_RS17245 0.65 +0.0 490,616 - HMPREF1058_RS17245 0.65 +1.0 490,616 - HMPREF1058_RS17245 0.65 -1.2 490,617 + HMPREF1058_RS17245 0.65 +0.0 490,656 - HMPREF1058_RS17245 0.66 +1.3 490,672 - HMPREF1058_RS17245 0.67 -2.3 490,676 - HMPREF1058_RS17245 0.67 +0.1 490,739 + HMPREF1058_RS17245 0.68 +2.6 490,742 - HMPREF1058_RS17245 0.69 -2.1 490,859 + HMPREF1058_RS17245 0.71 +0.7 490,862 + HMPREF1058_RS17245 0.72 +0.2 490,863 - HMPREF1058_RS17245 0.72 -2.3 490,901 + HMPREF1058_RS17245 0.73 -0.9 490,902 - HMPREF1058_RS17245 0.73 +1.0 490,903 + HMPREF1058_RS17245 0.73 -0.3 490,985 + HMPREF1058_RS17245 0.75 +0.6 491,077 + HMPREF1058_RS17245 0.77 +3.2 491,105 + HMPREF1058_RS17245 0.78 -1.0 491,106 - HMPREF1058_RS17245 0.78 -0.7 491,110 - HMPREF1058_RS17245 0.78 -2.8 491,181 + HMPREF1058_RS17245 0.80 +2.4 491,182 - HMPREF1058_RS17245 0.80 +2.7 491,183 + HMPREF1058_RS17245 0.80 -1.0 491,229 - HMPREF1058_RS17245 0.81 +0.6 491,257 + +0.0 491,423 - HMPREF1058_RS17245 0.86 -2.0 491,455 + HMPREF1058_RS17245 0.86 +0.2 491,455 + HMPREF1058_RS17245 0.86 +0.8 491,559 + HMPREF1058_RS17245 0.89 +0.9 491,589 + HMPREF1058_RS17245 0.90 +0.3 491,590 - HMPREF1058_RS17245 0.90 +0.8 491,967 + +0.2 491,970 + -3.3 491,994 - -1.2 492,001 - +1.6 492,157 - HMPREF1058_RS17240 0.11 +0.9 492,184 - HMPREF1058_RS17240 0.13 +0.0 492,235 + HMPREF1058_RS17240 0.16 -0.7 492,384 + HMPREF1058_RS17240 0.26 -3.3 492,491 - HMPREF1058_RS17240 0.33 -1.9 492,547 - HMPREF1058_RS17240 0.37 -0.4 492,619 + HMPREF1058_RS17240 0.42 +0.3 492,815 - HMPREF1058_RS17240 0.56 -0.9 492,815 - HMPREF1058_RS17240 0.56 -2.3 492,899 - HMPREF1058_RS17240 0.61 -1.8 492,901 + HMPREF1058_RS17240 0.61 +2.0 492,923 + HMPREF1058_RS17240 0.63 +4.0 492,923 + HMPREF1058_RS17240 0.63 -1.0 492,935 - HMPREF1058_RS17240 0.64 -0.2
Or see this region's nucleotide sequence