Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS16615

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS16620 and HMPREF1058_RS16615 are separated by 568 nucleotidesHMPREF1058_RS16615 and HMPREF1058_RS16610 are separated by 32 nucleotidesHMPREF1058_RS16610 and HMPREF1058_RS16605 are separated by 23 nucleotides HMPREF1058_RS16620: HMPREF1058_RS16620 - GGGtGRT protein, at 633,169 to 634,179 _RS16620 HMPREF1058_RS16615: HMPREF1058_RS16615 - DUF4857 domain-containing protein, at 634,748 to 635,776 _RS16615 HMPREF1058_RS16610: HMPREF1058_RS16610 - hypothetical protein, at 635,809 to 636,480 _RS16610 HMPREF1058_RS16605: HMPREF1058_RS16605 - ABC transporter ATP-binding protein, at 636,504 to 637,391 _RS16605 Position (kb) 634 635 636Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 633.816 kb on + strand, within HMPREF1058_RS16620at 633.817 kb on - strand, within HMPREF1058_RS16620at 633.836 kb on + strand, within HMPREF1058_RS16620at 633.861 kb on + strand, within HMPREF1058_RS16620at 633.897 kb on + strand, within HMPREF1058_RS16620at 633.898 kb on - strand, within HMPREF1058_RS16620at 633.901 kb on + strand, within HMPREF1058_RS16620at 633.901 kb on + strand, within HMPREF1058_RS16620at 633.902 kb on - strand, within HMPREF1058_RS16620at 633.927 kb on + strand, within HMPREF1058_RS16620at 633.969 kb on + strand, within HMPREF1058_RS16620at 634.035 kb on + strand, within HMPREF1058_RS16620at 634.035 kb on + strand, within HMPREF1058_RS16620at 634.127 kb on + strandat 634.157 kb on + strandat 634.177 kb on + strandat 634.177 kb on + strandat 634.180 kb on + strandat 634.181 kb on - strandat 634.185 kb on + strandat 634.186 kb on - strandat 634.193 kb on + strandat 634.201 kb on - strandat 634.201 kb on - strandat 634.201 kb on - strandat 634.365 kb on + strandat 634.415 kb on + strandat 634.483 kb on - strandat 634.483 kb on - strandat 634.504 kb on + strandat 634.505 kb on - strandat 634.507 kb on + strandat 634.508 kb on - strandat 634.547 kb on + strandat 634.552 kb on + strandat 634.557 kb on - strandat 634.609 kb on + strandat 634.610 kb on - strandat 634.610 kb on - strandat 634.612 kb on - strandat 634.707 kb on - strandat 634.711 kb on + strandat 634.711 kb on + strandat 634.718 kb on + strandat 634.856 kb on - strand, within HMPREF1058_RS16615at 634.869 kb on + strand, within HMPREF1058_RS16615at 634.872 kb on + strand, within HMPREF1058_RS16615at 634.875 kb on + strand, within HMPREF1058_RS16615at 634.875 kb on + strand, within HMPREF1058_RS16615at 634.875 kb on + strand, within HMPREF1058_RS16615at 634.876 kb on - strand, within HMPREF1058_RS16615at 634.876 kb on - strand, within HMPREF1058_RS16615at 634.896 kb on - strand, within HMPREF1058_RS16615at 634.918 kb on + strand, within HMPREF1058_RS16615at 634.999 kb on + strand, within HMPREF1058_RS16615at 635.025 kb on - strand, within HMPREF1058_RS16615at 635.029 kb on + strand, within HMPREF1058_RS16615at 635.029 kb on + strandat 635.066 kb on - strand, within HMPREF1058_RS16615at 635.073 kb on + strand, within HMPREF1058_RS16615at 635.074 kb on - strand, within HMPREF1058_RS16615at 635.152 kb on + strand, within HMPREF1058_RS16615at 635.153 kb on - strand, within HMPREF1058_RS16615at 635.166 kb on - strand, within HMPREF1058_RS16615at 635.176 kb on - strand, within HMPREF1058_RS16615at 635.497 kb on + strand, within HMPREF1058_RS16615at 635.535 kb on + strand, within HMPREF1058_RS16615at 635.572 kb on + strand, within HMPREF1058_RS16615at 635.573 kb on - strand, within HMPREF1058_RS16615at 635.573 kb on - strand, within HMPREF1058_RS16615at 635.574 kb on + strand, within HMPREF1058_RS16615at 635.574 kb on + strand, within HMPREF1058_RS16615at 635.578 kb on + strand, within HMPREF1058_RS16615at 635.579 kb on - strand, within HMPREF1058_RS16615at 635.611 kb on + strand, within HMPREF1058_RS16615at 635.658 kb on + strand, within HMPREF1058_RS16615at 635.658 kb on + strand, within HMPREF1058_RS16615at 635.658 kb on + strand, within HMPREF1058_RS16615at 635.658 kb on + strand, within HMPREF1058_RS16615at 635.658 kb on + strand, within HMPREF1058_RS16615at 635.659 kb on - strand, within HMPREF1058_RS16615at 635.662 kb on + strand, within HMPREF1058_RS16615at 635.663 kb on - strand, within HMPREF1058_RS16615at 635.663 kb on - strand, within HMPREF1058_RS16615at 635.665 kb on + strand, within HMPREF1058_RS16615at 635.749 kb on - strandat 635.875 kb on - strandat 635.902 kb on - strand, within HMPREF1058_RS16610at 635.905 kb on - strand, within HMPREF1058_RS16610at 635.906 kb on + strand, within HMPREF1058_RS16610at 636.087 kb on + strand, within HMPREF1058_RS16610at 636.105 kb on - strand, within HMPREF1058_RS16610at 636.118 kb on - strand, within HMPREF1058_RS16610at 636.121 kb on - strand, within HMPREF1058_RS16610at 636.130 kb on - strand, within HMPREF1058_RS16610at 636.154 kb on + strand, within HMPREF1058_RS16610at 636.214 kb on - strand, within HMPREF1058_RS16610at 636.214 kb on - strand, within HMPREF1058_RS16610at 636.229 kb on - strand, within HMPREF1058_RS16610at 636.310 kb on + strand, within HMPREF1058_RS16610at 636.310 kb on + strand, within HMPREF1058_RS16610at 636.310 kb on + strand, within HMPREF1058_RS16610at 636.311 kb on - strand, within HMPREF1058_RS16610at 636.313 kb on - strand, within HMPREF1058_RS16610at 636.369 kb on + strand, within HMPREF1058_RS16610at 636.411 kb on + strand, within HMPREF1058_RS16610at 636.480 kb on + strandat 636.480 kb on + strandat 636.481 kb on - strandat 636.629 kb on - strand, within HMPREF1058_RS16605at 636.707 kb on + strand, within HMPREF1058_RS16605at 636.713 kb on + strand, within HMPREF1058_RS16605at 636.713 kb on + strand, within HMPREF1058_RS16605at 636.713 kb on + strand, within HMPREF1058_RS16605at 636.713 kb on + strand, within HMPREF1058_RS16605

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
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633,816 + HMPREF1058_RS16620 0.64 -3.9
633,817 - HMPREF1058_RS16620 0.64 -2.0
633,836 + HMPREF1058_RS16620 0.66 -4.1
633,861 + HMPREF1058_RS16620 0.68 -3.1
633,897 + HMPREF1058_RS16620 0.72 -3.4
633,898 - HMPREF1058_RS16620 0.72 +0.0
633,901 + HMPREF1058_RS16620 0.72 -3.3
633,901 + HMPREF1058_RS16620 0.72 -2.6
633,902 - HMPREF1058_RS16620 0.73 -3.1
633,927 + HMPREF1058_RS16620 0.75 +0.0
633,969 + HMPREF1058_RS16620 0.79 -1.0
634,035 + HMPREF1058_RS16620 0.86 -5.3
634,035 + HMPREF1058_RS16620 0.86 +0.0
634,127 + -2.0
634,157 + -1.0
634,177 + +0.5
634,177 + -0.1
634,180 + +0.4
634,181 - -2.0
634,185 + +1.8
634,186 - -0.0
634,193 + +0.4
634,201 - -0.2
634,201 - +0.0
634,201 - -0.8
634,365 + -0.2
634,415 + +0.9
634,483 - -0.0
634,483 - -1.1
634,504 + +0.2
634,505 - +2.0
634,507 + +0.5
634,508 - +0.7
634,547 + -0.4
634,552 + -1.0
634,557 - -0.7
634,609 + +0.6
634,610 - +1.0
634,610 - -1.3
634,612 - +0.4
634,707 - -3.8
634,711 + -3.0
634,711 + +0.5
634,718 + -1.0
634,856 - HMPREF1058_RS16615 0.10 -1.0
634,869 + HMPREF1058_RS16615 0.12 +1.9
634,872 + HMPREF1058_RS16615 0.12 -1.1
634,875 + HMPREF1058_RS16615 0.12 +1.3
634,875 + HMPREF1058_RS16615 0.12 +1.3
634,875 + HMPREF1058_RS16615 0.12 -1.0
634,876 - HMPREF1058_RS16615 0.12 +4.6
634,876 - HMPREF1058_RS16615 0.12 +0.0
634,896 - HMPREF1058_RS16615 0.14 -0.7
634,918 + HMPREF1058_RS16615 0.17 +1.5
634,999 + HMPREF1058_RS16615 0.24 +1.9
635,025 - HMPREF1058_RS16615 0.27 +0.3
635,029 + HMPREF1058_RS16615 0.27 -1.0
635,029 + -1.0
635,066 - HMPREF1058_RS16615 0.31 +0.5
635,073 + HMPREF1058_RS16615 0.32 +1.0
635,074 - HMPREF1058_RS16615 0.32 +0.6
635,152 + HMPREF1058_RS16615 0.39 +1.3
635,153 - HMPREF1058_RS16615 0.39 +3.3
635,166 - HMPREF1058_RS16615 0.41 +2.0
635,176 - HMPREF1058_RS16615 0.42 +1.3
635,497 + HMPREF1058_RS16615 0.73 -0.4
635,535 + HMPREF1058_RS16615 0.76 +0.0
635,572 + HMPREF1058_RS16615 0.80 +0.5
635,573 - HMPREF1058_RS16615 0.80 +1.5
635,573 - HMPREF1058_RS16615 0.80 +0.0
635,574 + HMPREF1058_RS16615 0.80 -0.1
635,574 + HMPREF1058_RS16615 0.80 +2.1
635,578 + HMPREF1058_RS16615 0.81 +1.9
635,579 - HMPREF1058_RS16615 0.81 -1.3
635,611 + HMPREF1058_RS16615 0.84 -2.3
635,658 + HMPREF1058_RS16615 0.88 +0.8
635,658 + HMPREF1058_RS16615 0.88 -0.8
635,658 + HMPREF1058_RS16615 0.88 -2.3
635,658 + HMPREF1058_RS16615 0.88 -3.0
635,658 + HMPREF1058_RS16615 0.88 -0.5
635,659 - HMPREF1058_RS16615 0.89 +0.7
635,662 + HMPREF1058_RS16615 0.89 +0.3
635,663 - HMPREF1058_RS16615 0.89 +1.0
635,663 - HMPREF1058_RS16615 0.89 -0.2
635,665 + HMPREF1058_RS16615 0.89 +2.8
635,749 - -0.2
635,875 - -2.1
635,902 - HMPREF1058_RS16610 0.14 -1.6
635,905 - HMPREF1058_RS16610 0.14 -2.4
635,906 + HMPREF1058_RS16610 0.14 -0.3
636,087 + HMPREF1058_RS16610 0.41 -2.8
636,105 - HMPREF1058_RS16610 0.44 +1.2
636,118 - HMPREF1058_RS16610 0.46 +0.0
636,121 - HMPREF1058_RS16610 0.46 -1.0
636,130 - HMPREF1058_RS16610 0.48 -1.0
636,154 + HMPREF1058_RS16610 0.51 -0.3
636,214 - HMPREF1058_RS16610 0.60 +0.0
636,214 - HMPREF1058_RS16610 0.60 -1.2
636,229 - HMPREF1058_RS16610 0.62 +0.8
636,310 + HMPREF1058_RS16610 0.75 -1.6
636,310 + HMPREF1058_RS16610 0.75 -0.2
636,310 + HMPREF1058_RS16610 0.75 -2.3
636,311 - HMPREF1058_RS16610 0.75 +0.0
636,313 - HMPREF1058_RS16610 0.75 +0.0
636,369 + HMPREF1058_RS16610 0.83 -2.0
636,411 + HMPREF1058_RS16610 0.90 +0.0
636,480 + -0.6
636,480 + +0.0
636,481 - -1.0
636,629 - HMPREF1058_RS16605 0.14 +1.6
636,707 + HMPREF1058_RS16605 0.23 -2.9
636,713 + HMPREF1058_RS16605 0.24 +3.2
636,713 + HMPREF1058_RS16605 0.24 -1.0
636,713 + HMPREF1058_RS16605 0.24 +1.2
636,713 + HMPREF1058_RS16605 0.24 +0.0

Or see this region's nucleotide sequence